View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14678_low_9 (Length: 389)
Name: NF14678_low_9
Description: NF14678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14678_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 335; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 20 - 386
Target Start/End: Original strand, 3433831 - 3434197
Alignment:
| Q |
20 |
gcttatatgtttcattttctaattcaatataaaaattttgctcgagaggaatttaatgcgagacttctgactcacattaactacaaaataatcaatataa |
119 |
Q |
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| T |
3433831 |
gcttatatgtttcattttctaattcaatgtgaaaattttgctcgagaggaattcaatacgagacttctaactcacattaactacaaaataatcaatttaa |
3433930 |
T |
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| Q |
120 |
catttttatgtagtaatctatatccaaattttgtttatcaattatcatgaggtcttacttgtaacacaaagagggatgaccatgcaagagtagcaatgat |
219 |
Q |
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| T |
3433931 |
catttttatgtagtaatctatatccaaattttgtttatcaattatcatgaggtcttacttgtaacacaaagagggatgaccatgcaagagtagcaatgat |
3434030 |
T |
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| Q |
220 |
tagtaaaatggagcctaagaaccaattatccttgcttgaggaacttgaaatatttgcattgctatgaggtatatatttagtccacatcaactccaaaact |
319 |
Q |
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| T |
3434031 |
tagtaaaatggagcctaagaaccaattatccttgcttgaggaacttgtaatatttgcattactatgaggtatatatttagtccacatcaactccaaaact |
3434130 |
T |
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| Q |
320 |
ggtcctttgtacaaggtcatcaacattgccccagccacagttaaaatggttccaatcacctttgctt |
386 |
Q |
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| T |
3434131 |
ggtcctttgtacaaggtcatcaacattgccccagccacagttaaaatggttccaatcacctttgctt |
3434197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 153 - 386
Target Start/End: Original strand, 3374932 - 3375174
Alignment:
| Q |
153 |
tttatcaattatcatgaggtcttacttgtaacacaaagagggatgaccatgcaagagtagcaatgattagtaaaatggagcctaagaaccaattatcctt |
252 |
Q |
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| T |
3374932 |
tttatcaattatcatgagatcttacttgtaaaacaaagagtgatgcccatgcaatggtagaaatgattagtaaaatggaacctaaaaaccaattattctt |
3375031 |
T |
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| Q |
253 |
gcttgaggaacttgaaatat---ttgcattg------ctatgaggtatatatttagtccacatcaactccaaaactggtcctttgtacaaggtcatcaac |
343 |
Q |
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| T |
3375032 |
gcttgaggatcttgtgatgtttgttgcattgcttttactatgaaatatatgtccagtccaaaataactccacaataggacctttgtataaggtcatcaac |
3375131 |
T |
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| Q |
344 |
attgccccagccacagttaaaatggttccaatcacctttgctt |
386 |
Q |
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| T |
3375132 |
attgccccagccacagttaaaatggttccaatcacctttgctt |
3375174 |
T |
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