View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14679_high_1 (Length: 510)

Name: NF14679_high_1
Description: NF14679
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14679_high_1
NF14679_high_1
[»] chr3 (15 HSPs)
chr3 (16-189)||(6073286-6073459)
chr3 (257-475)||(6069065-6069281)
chr3 (257-367)||(6113412-6113521)
chr3 (257-367)||(6120304-6120413)
chr3 (16-174)||(6080354-6080512)
chr3 (257-366)||(6091236-6091344)
chr3 (16-176)||(6068826-6068986)
chr3 (402-493)||(6089795-6089886)
chr3 (402-492)||(6120447-6120537)
chr3 (124-192)||(6113281-6113348)
chr3 (402-492)||(6113555-6113646)
chr3 (124-194)||(6120173-6120242)
chr3 (255-289)||(6073188-6073222)
chr3 (124-194)||(6091406-6091475)
chr3 (263-324)||(31290554-31290615)
[»] chr7 (1 HSPs)
chr7 (275-331)||(7235796-7235852)
[»] scaffold0003 (2 HSPs)
scaffold0003 (276-335)||(103083-103142)
scaffold0003 (276-310)||(108167-108201)
[»] chr5 (2 HSPs)
chr5 (273-324)||(29490052-29490103)
chr5 (275-312)||(26316083-26316120)
[»] chr4 (1 HSPs)
chr4 (257-313)||(16715414-16715470)


Alignment Details
Target: chr3 (Bit Score: 154; Significance: 2e-81; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 16 - 189
Target Start/End: Complemental strand, 6073459 - 6073286
Alignment:
Q  16 atgtttcagagatgatgattgtgcaaaaaatatgtgtccatcttatttggtcgtgaaatgtgtcagcggtatttgtaaatgtgttagaccgtagttcaaa 115  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| |||||||| |||||||||||||||||||||||||    
T  6073459 atgtttcagagatgatgattgtgcaaaaaatatgtgtccgtcttatttggtcgtgaagtgtgtcaacggtatttataaatgtgttagaccgtagttcaaa 6073360  T
Q  116 taaaaacctaatcccaattgattttgtatgttgtgcaagaaccaagagagtacacaaaagtcctttaagaatat 189  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6073359 taaaaacctaatcccaagtgattttgtatgttgtgcaagaaccaagagagtacacaaaagtcctttaagaatat 6073286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 257 - 475
Target Start/End: Original strand, 6069065 - 6069281
Alignment:
Q  257 agaaccttgtagtgaaggctttgtactctaagatgatgttaatgaaatgaaataaggtagaaaataatatcattaagattgtttttcttgtctcttaata 356  Q
    ||||||||||||| | | |||||||||||||||||||||||||||||||||||||| ||| |||||||||| |||||||| || || ||||||||||||     
T  6069065 agaaccttgtagtaatgcctttgtactctaagatgatgttaatgaaatgaaataagatagcaaataatatctttaagatt-ttctttttgtctcttaatt 6069163  T
Q  357 ttagagatatcccnnnnnnnnnnnnccaactcacaacacatcagaatatgtttaatagttaagttgtaaaatagtttttatcttacttataatccaatac 456  Q
    ||||||||||| |            | |  | || ||  ||||  ||||||||||||||||||||| ||||||||||||| |||||  ||||||| ||||    
T  6069164 ttagagatatcac-cattttcttttcaattttaccacgtatcaatatatgtttaatagttaagttgaaaaatagtttttagcttaccaataatcctatac 6069262  T
Q  457 ttttatattcatgttataa 475  Q
    |||||||||||| ||||||    
T  6069263 ttttatattcatcttataa 6069281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 257 - 367
Target Start/End: Original strand, 6113412 - 6113521
Alignment:
Q  257 agaaccttgtagtgaaggctttgtactctaagatgatgttaatgaaatgaaataaggtagaaaataatatcattaagattgtttttcttgtctcttaata 356  Q
    ||||||||||||| | |||||||||||||||||||||| ||||||||| ||||||| |||  |||||||||||||||||||| ||| |||||| |||||     
T  6113412 agaaccttgtagtaatggctttgtactctaagatgatggtaatgaaatcaaataagatagtgaataatatcattaagattgtcttt-ttgtctattaatt 6113510  T
Q  357 ttagagatatc 367  Q
    |||||||||||    
T  6113511 ttagagatatc 6113521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 257 - 367
Target Start/End: Original strand, 6120304 - 6120413
Alignment:
Q  257 agaaccttgtagtgaaggctttgtactctaagatgatgttaatgaaatgaaataaggtagaaaataatatcattaagattgtttttcttgtctcttaata 356  Q
    ||||||||||||| | |||||||||||||||||||||| ||||||||| ||||||| |||  |||||||||||||||||| | ||| ||||||||||||     
T  6120304 agaaccttgtagtaatggctttgtactctaagatgatggtaatgaaatcaaataagatagtgaataatatcattaagattatcttt-ttgtctcttaatt 6120402  T
Q  357 ttagagatatc 367  Q
    |||||||||||    
T  6120403 ttagagatatc 6120413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 16 - 174
Target Start/End: Complemental strand, 6080512 - 6080354
Alignment:
Q  16 atgtttcagagatgatgattgtgcaaaaaatatgtgtccatcttatttggtcgtgaaatgtgtcagcggtatttgtaaatgtgttagaccgtagttcaaa 115  Q
    |||||| ||||||  ||||||| ||||||||||||||||||| |||||||||||||| ||| ||||  ||| |||||| |||||||||||   |||  ||    
T  6080512 atgttttagagattctgattgtccaaaaaatatgtgtccatcctatttggtcgtgaagtgtctcagaagtaattgtaagtgtgttagaccagggttgcaa 6080413  T
Q  116 taaaaacctaatcccaattgattttgtatgttgtgcaagaaccaagagagtacacaaaa 174  Q
      || || ||||||||||||||||||||| | ||| ||||  ||||||||| |||||||    
T  6080412 gtaagacttaatcccaattgattttgtatttagtgaaagagtcaagagagtgcacaaaa 6080354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 257 - 366
Target Start/End: Complemental strand, 6091344 - 6091236
Alignment:
Q  257 agaaccttgtagtgaaggctttgtactctaagatgatgttaatgaaatgaaataaggtagaaaataatatcattaagattgtttttcttgtctcttaata 356  Q
    ||||||||||||| | ||||||| |||||||||||||| |||||||||  |||||| ||| |||||||||||||| |||||| | | ||||||||||||     
T  6091344 agaaccttgtagtaatggctttggactctaagatgatggtaatgaaatcgaataagatagtaaataatatcattacgattgtctgt-ttgtctcttaatt 6091246  T
Q  357 ttagagatat 366  Q
    ||||||||||    
T  6091245 ttagagatat 6091236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 16 - 176
Target Start/End: Original strand, 6068826 - 6068986
Alignment:
Q  16 atgtttcagagatgatgattgtgcaaaaaatatgtgtccatcttatttggtcgtgaaatgtgtcagcggtatttgtaaatgtgttagaccgtagttcaaa 115  Q
    |||||| ||||||  ||||||| |||||  |||||| ||||||||||||| |||||| ||| || |  |  ||||||  |||| ||||||| ||||  ||    
T  6068826 atgttttagagattctgattgtccaaaatttatgtgcccatcttatttggccgtgaagtgtatcggaagactttgtaggtgtggtagaccggagttgcaa 6068925  T
Q  116 taaaaacctaatcccaattgattttgtatgttgtgcaagaaccaagagagtacacaaaagt 176  Q
      | ||| ||||||||| ||||||||||| | ||| |||||||||||||||| ||||||||    
T  6068926 gtagaacttaatcccaaatgattttgtatttagtgaaagaaccaagagagtaaacaaaagt 6068986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 402 - 493
Target Start/End: Complemental strand, 6089886 - 6089795
Alignment:
Q  402 atatgtttaatagttaagttgtaaaatagtttttatcttacttataatccaatacttttatattcatgttataaagtttttatacttgtaat 493  Q
    ||||||||||||| ||||||| | |||| |||||| |||||  | ||||| |||| ||||||||||||| |||| ||||| |||||||||||    
T  6089886 atatgtttaataggtaagttgaacaatattttttaccttaccaacaatcctatacatttatattcatgtcataatgttttgatacttgtaat 6089795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 402 - 492
Target Start/End: Original strand, 6120447 - 6120537
Alignment:
Q  402 atatgtttaatagttaagttgtaaaatagtttttatcttacttataatccaatacttttatattcatgttataaagtttttatacttgtaa 492  Q
    ||||||||||||| ||||||| ||||||||||||  ||||   ||||||| |||| ||||||||||||||||||   ||| ||||||||||    
T  6120447 atatgtttaataggtaagttgaaaaatagttttttccttatcaataatcctatacatttatattcatgttataataatttcatacttgtaa 6120537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 124 - 192
Target Start/End: Original strand, 6113281 - 6113348
Alignment:
Q  124 taatcccaattgattttgtatgttgtgcaagaaccaagagagtacacaaaagtcctttaagaatattac 192  Q
    ||||||||| ||||||||||| | ||| ||||||||||||| ||||||||||| |||| ||||||||||    
T  6113281 taatcccaagtgattttgtatttagtgaaagaaccaagagaatacacaaaagt-cttttagaatattac 6113348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 402 - 492
Target Start/End: Original strand, 6113555 - 6113646
Alignment:
Q  402 atatgtttaatagttaagttgtaaaatagtttttatc-ttacttataatccaatacttttatattcatgttataaagtttttatacttgtaa 492  Q
    ||||||||||||| ||||||| ||||||||||||| | |||   ||||||| |||||||||||| ||||||||||   ||| ||||||||||    
T  6113555 atatgtttaataggtaagttgaaaaatagtttttacctttatcaataatcctatacttttatatccatgttataataatttcatacttgtaa 6113646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 124 - 194
Target Start/End: Original strand, 6120173 - 6120242
Alignment:
Q  124 taatcccaattgattttgtatgttgtgcaagaaccaagagagtacacaaaagtcctttaagaatattacat 194  Q
    ||||||||| ||||||||||| |  || |||||||| |||||||||||||||| |||| ||||||||||||    
T  6120173 taatcccaagtgattttgtatttactgaaagaaccaggagagtacacaaaagt-cttttagaatattacat 6120242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 255 - 289
Target Start/End: Complemental strand, 6073222 - 6073188
Alignment:
Q  255 ccagaaccttgtagtgaaggctttgtactctaaga 289  Q
    ||||||||||||| |||||||||||||||||||||    
T  6073222 ccagaaccttgtattgaaggctttgtactctaaga 6073188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 124 - 194
Target Start/End: Complemental strand, 6091475 - 6091406
Alignment:
Q  124 taatcccaattgattttgtatgttgtgcaagaaccaagagagtacacaaaagtcctttaagaatattacat 194  Q
    ||||||| | ||||||||||| | ||| ||||||||||| || |||||||||| |||| ||||||||||||    
T  6091475 taatccctagtgattttgtatttagtgaaagaaccaagacaggacacaaaagt-cttttagaatattacat 6091406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 263 - 324
Target Start/End: Original strand, 31290554 - 31290615
Alignment:
Q  263 ttgtagtgaaggctttgtactctaagatgatgttaatgaaatgaaataaggtagaaaataat 324  Q
    ||||||| | || ||| |||||||| || ||| |||||||||||||||||| ||||||||||    
T  31290554 ttgtagttatggttttatactctaatataatggtaatgaaatgaaataaggcagaaaataat 31290615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 275 - 331
Target Start/End: Original strand, 7235796 - 7235852
Alignment:
Q  275 ctttgtactctaagatgatgttaatgaaatgaaataaggtagaaaataatatcatta 331  Q
    |||||||||||||||||||| ||||||||| |||||||| || ||||||||| ||||    
T  7235796 ctttgtactctaagatgatgataatgaaataaaataaggcagcaaataatattatta 7235852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 276 - 335
Target Start/End: Complemental strand, 103142 - 103083
Alignment:
Q  276 tttgtactctaagatgatgttaatgaaatgaaataaggtagaaaataatatcattaagat 335  Q
    ||||||||||||||||||| |||| ||||||||||||  | |||||||||| ||| ||||    
T  103142 tttgtactctaagatgatggtaatcaaatgaaataagaaataaaataatattatttagat 103083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 276 - 310
Target Start/End: Complemental strand, 108201 - 108167
Alignment:
Q  276 tttgtactctaagatgatgttaatgaaatgaaata 310  Q
    ||||||||||||||||||| |||||||||||||||    
T  108201 tttgtactctaagatgatggtaatgaaatgaaata 108167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 273 - 324
Target Start/End: Original strand, 29490052 - 29490103
Alignment:
Q  273 ggctttgtactctaagatgatgttaatgaaatgaaataaggtagaaaataat 324  Q
    |||||||||||||||||| ||| || ||||||||||||||| || |||||||    
T  29490052 ggctttgtactctaagattatgatattgaaatgaaataaggcagcaaataat 29490103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 275 - 312
Target Start/End: Original strand, 26316083 - 26316120
Alignment:
Q  275 ctttgtactctaagatgatgttaatgaaatgaaataag 312  Q
    ||||||||||||||||| || |||||||||||||||||    
T  26316083 ctttgtactctaagatgttggtaatgaaatgaaataag 26316120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 257 - 313
Target Start/End: Complemental strand, 16715470 - 16715414
Alignment:
Q  257 agaaccttgtagtgaaggctttgtactctaagatgatgttaatgaaatgaaataagg 313  Q
    ||||||||||| | | || |||||| | |||||||||| ||||||||||||||||||    
T  16715470 agaaccttgtatttatggatttgtattataagatgatggtaatgaaatgaaataagg 16715414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University