View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14679_high_3 (Length: 430)
Name: NF14679_high_3
Description: NF14679
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14679_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 405; Significance: 0; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 1 - 421
Target Start/End: Original strand, 9870554 - 9870974
Alignment:
| Q |
1 |
tagctagatacatgttctgaatgtcatcatttttggagggacatgaaaaccaatcatgcctgactcttaacattgttttctggcattagttgatttatat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9870554 |
tagctagatacatgttctgaatgtcatcatttttggagggacatgaaaaccaattatgcctgactcttaacattgttttctggcattagttgatttatat |
9870653 |
T |
|
| Q |
101 |
gagatccaacaatgccaagaggaatgtttttcattagatattgttttcagtagacagtagtcacacaaccattatccatagcaccttaaaagacgtacac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
9870654 |
gagatccaacaatgccaagaggaatgtttttcattagatattgttttcagtagacagtagtcacacaaccattatccacagcaccttaaaagacgtacac |
9870753 |
T |
|
| Q |
201 |
tcttgtagcaaatattttctgttttcattaaaaagtataatgtaactcaataagataatagccacaagaggaatgttgaccaagcggtgagagcaatggc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9870754 |
tcttgtagcaaatattttctgttttcattaaaaagtataatgtaactcaataagataatagccacaagaggaatgttgaccaagcggtgagagcaatggc |
9870853 |
T |
|
| Q |
301 |
tgcagcactatatgcccacaacagaataactgaacattcttcatttcctacatcaaacacctgagccattgtgcctacataatgtatcatcaaattttga |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
9870854 |
tgcagcactatatgcccacaacagaataactgaacattcttcatttcctacatcaaacacctgagccattgtacctacataatgtatcatcaaattttga |
9870953 |
T |
|
| Q |
401 |
agttaggaacaacagtataat |
421 |
Q |
| |
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|||||||||||||| |||||| |
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| T |
9870954 |
agttaggaacaacaatataat |
9870974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 239 - 421
Target Start/End: Original strand, 9896293 - 9896479
Alignment:
| Q |
239 |
aatgtaactcaataagataatagccacaagaggaatgttgaccaagcggtgagagcaatggctgcagcactatatgcccacaacagaataactgaacatt |
338 |
Q |
| |
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|||| ||||||||||||||| ||||||| ||| |||||||||||||| |||||||| ||||||||||||||||||| ||||||||||||||||||||| | |
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| T |
9896293 |
aatgcaactcaataagataacagccacaggagaaatgttgaccaagcagtgagagctatggctgcagcactatatgtccacaacagaataactgaacact |
9896392 |
T |
|
| Q |
339 |
cttcatttcctacatcaaacacctgagccattgtgcctacataatgtatcatca----aattttgaagttaggaacaacagtataat |
421 |
Q |
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||||||||||||||||||||| |||||||||||| ||||||||||||||||||| |||||||||||||||||||||| |||||| |
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| T |
9896393 |
cttcatttcctacatcaaacagctgagccattgtacctacataatgtatcatcaaattaattttgaagttaggaacaacaatataat |
9896479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 251 - 383
Target Start/End: Original strand, 9906583 - 9906715
Alignment:
| Q |
251 |
taagataatagccacaagaggaatgttgaccaagcggtgagagcaatggctgcagcactatatgcccacaacagaataactgaacattcttcatttccta |
350 |
Q |
| |
|
|||||||||||||| | || ||||||||||||| |||||||| ||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| |
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| T |
9906583 |
taagataatagccagagcagaaatgttgaccaagaagtgagagctatggctgcagcactatatgtccacaacagaataactgaacactcttcatttccta |
9906682 |
T |
|
| Q |
351 |
catcaaacacctgagccattgtgcctacataat |
383 |
Q |
| |
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||||||||| |||||||||||| ||| |||||| |
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|
| T |
9906683 |
catcaaacagctgagccattgtacctgcataat |
9906715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 249 - 383
Target Start/End: Complemental strand, 9865731 - 9865597
Alignment:
| Q |
249 |
aataagataatagccacaagaggaatgttgaccaagcggtgagagcaatggctgcagcactatatgcccacaacagaataactgaacattcttcatttcc |
348 |
Q |
| |
|
||||||||||||||||| |||| ||||| |||||||| |||||||| ||||||||||||||||||| || || ||||| |||||||| ||||||||||| |
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| T |
9865731 |
aataagataatagccacgagagaaatgtcgaccaagcagtgagagctatggctgcagcactatatgtccgtaagagaattactgaacactcttcatttcc |
9865632 |
T |
|
| Q |
349 |
tacatcaaacacctgagccattgtgcctacataat |
383 |
Q |
| |
|
||||||||||| |||||| || || ||| |||||| |
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|
| T |
9865631 |
tacatcaaacagctgagcgatagtacctgcataat |
9865597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 158 - 226
Target Start/End: Original strand, 9895933 - 9896002
Alignment:
| Q |
158 |
tagtcacacaaccattatccatagcaccttaaa-agacgtacactcttgtagcaaatattttctgttttc |
226 |
Q |
| |
|
|||||||||| |||||||||| || |||||||| |||| || ||||||| ||||||||||||||||||| |
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| T |
9895933 |
tagtcacacagccattatccacagaaccttaaagagacttaagctcttgtggcaaatattttctgttttc |
9896002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 32 - 87
Target Start/End: Complemental strand, 9865804 - 9865750
Alignment:
| Q |
32 |
tttggagggacatgaaaaccaatcatgcctgactcttaacattgttttctggcatt |
87 |
Q |
| |
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|||||||||||||||||||||||| || | ||||||||| ||||||||||||||| |
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|
| T |
9865804 |
tttggagggacatgaaaaccaatc-tgtcagactcttaattttgttttctggcatt |
9865750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 31 - 88
Target Start/End: Original strand, 9906505 - 9906562
Alignment:
| Q |
31 |
ttttggagggacatgaaaaccaatcatgcctgactcttaacattgttttctggcatta |
88 |
Q |
| |
|
|||||||||||||||||||| ||||||| | ||||||||| ||||||| ||||||| |
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|
| T |
9906505 |
ttttggagggacatgaaaactaatcatgtcagactcttaattttgttttacggcatta |
9906562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 251 - 383
Target Start/End: Complemental strand, 30949269 - 30949137
Alignment:
| Q |
251 |
taagataatagccacaagaggaatgttgaccaagcggtgagagcaatggctgcagcactatatgcccacaacagaataactgaacattcttcatttccta |
350 |
Q |
| |
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||||||||| ||| | |||||||||||||||| ||||| || || |||||||||| ||| | |||||| |||||||||||| | ||||| | |||| |
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| T |
30949269 |
taagataatgaccataggaggaatgttgaccaaagagtgagtgctatagctgcagcaccataagaccacaaaagaataactgaaaactcttctgtgccta |
30949170 |
T |
|
| Q |
351 |
catcaaacacctgagccattgtgcctacataat |
383 |
Q |
| |
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||||||||| ||||| ||| || ||| |||||| |
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|
| T |
30949169 |
catcaaacagctgagtcatggtaccttcataat |
30949137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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