View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14679_low_10 (Length: 246)
Name: NF14679_low_10
Description: NF14679
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14679_low_10 |
 | |
|
| [»] scaffold0011 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 158; Significance: 3e-84; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 1 - 187
Target Start/End: Original strand, 17582028 - 17582218
Alignment:
| Q |
1 |
atgaatcattacaattcatatcacaatctaagacaagtacataagggccattgctgattagccctgaaaccctaagctgatgaaatgttaaatgattaag |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
17582028 |
atgaatcattacaattcatatcacaatctaagacaagtacataagggccattgctgattagccctgaaacccttagctgatgaaatgttaaatgattaag |
17582127 |
T |
|
| Q |
101 |
tatatac----gtgtgtgtatcataaatttaatttgggttaatatatatttatcatcatgtaatattagtgatttccggtttaccctctgt |
187 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||| ||||||| |
|
|
| T |
17582128 |
tatatacgtatgtgtgtgtatcataaatttaatttgggttaatatatatttaccaccatgtaatattagtgatttccggtttatcctctgt |
17582218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 201 - 239
Target Start/End: Original strand, 17582240 - 17582278
Alignment:
| Q |
201 |
aaccctataatttaaagatttttggttttgaaccttcat |
239 |
Q |
| |
|
|||||| |||||||||||||||| ||||||||||||||| |
|
|
| T |
17582240 |
aaccctgtaatttaaagatttttcgttttgaaccttcat |
17582278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 185
Target Start/End: Complemental strand, 45008244 - 45008188
Alignment:
| Q |
129 |
tttgggttaatatatatttatcatcatgtaatattagtgatttccggtttaccctct |
185 |
Q |
| |
|
|||||||||||||||| ||| | | ||||||||||| |||||| |||||||||||| |
|
|
| T |
45008244 |
tttgggttaatatataattacccccttgtaatattagcgatttctggtttaccctct |
45008188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 59; Significance: 4e-25; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 16383121 - 16383199
Alignment:
| Q |
1 |
atgaatcattacaattcatatcacaatctaagacaagtacataagggccattgctgattagccctgaaaccctaagctg |
79 |
Q |
| |
|
|||||||||||||||||||||||||||||| | ||| ||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
16383121 |
atgaatcattacaattcatatcacaatctacaataagaacataagggccattgctgattagccctgataccctaagctg |
16383199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 153 - 182
Target Start/End: Complemental strand, 42223368 - 42223339
Alignment:
| Q |
153 |
catgtaatattagtgatttccggtttaccc |
182 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
42223368 |
catgtaatattagtgatttccggtttaccc |
42223339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0011 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0011
Description:
Target: scaffold0011; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 5 - 79
Target Start/End: Complemental strand, 15565 - 15491
Alignment:
| Q |
5 |
atcattacaattcatatcacaatctaagacaagtacataagggccattgctgattagccctgaaaccctaagctg |
79 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||| ||||||||||| |
|
|
| T |
15565 |
atcattacaattcatatcacaatctaccacaagaacataaggtccattgctgattagccctgacaccctaagctg |
15491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 132 - 187
Target Start/End: Complemental strand, 3816820 - 3816765
Alignment:
| Q |
132 |
gggttaatatatatttatcatcatgtaatattagtgatttccggtttaccctctgt |
187 |
Q |
| |
|
||||||||| || |||||| |||||||||||||| |||||| ||||||||| |||| |
|
|
| T |
3816820 |
gggttaatacatgtttatcctcatgtaatattagcgatttctggtttaccccctgt |
3816765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 133 - 182
Target Start/End: Complemental strand, 9235653 - 9235604
Alignment:
| Q |
133 |
ggttaatatatatttatcatcatgtaatattagtgatttccggtttaccc |
182 |
Q |
| |
|
||||||||||| |||| | | |||||||||||||||||||||||||||| |
|
|
| T |
9235653 |
ggttaatatatgtttacccccctgtaatattagtgatttccggtttaccc |
9235604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 206 - 239
Target Start/End: Original strand, 23159549 - 23159582
Alignment:
| Q |
206 |
tataatttaaagatttttggttttgaaccttcat |
239 |
Q |
| |
|
||||||||||||||||||||||||| |||||||| |
|
|
| T |
23159549 |
tataatttaaagatttttggttttggaccttcat |
23159582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University