View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14679_low_12 (Length: 236)
Name: NF14679_low_12
Description: NF14679
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14679_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 97; Significance: 8e-48; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 9870547 - 9870451
Alignment:
| Q |
1 |
tcctatttccttctataggaaaaaagtgcattatctattgaaaaatgtaaagtgtgtttttcatgtagtagtccattagtcttgcactggaaacaaa |
97 |
Q |
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| T |
9870547 |
tcctatttccttctataggaaaaaagtgcattatctattgaaaaatgtaaagtgtgtttttcatgtagtagtccattagtcttgcactggaaacaaa |
9870451 |
T |
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Target: chr5; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 9 - 97
Target Start/End: Original strand, 9865844 - 9865931
Alignment:
| Q |
9 |
ccttctataggaaaaaagtgcattatctattgaaaaatgtaaagtgtgtttttcatgtagtagtccattagtcttgcactggaaacaaa |
97 |
Q |
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| T |
9865844 |
ccttctataggaaaaa-gtgtattatttattgaaaaatgtaaagtgtgtttttcatgtagtagtctattagtcatgcaccggaaacaaa |
9865931 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 161 - 221
Target Start/End: Complemental strand, 9870387 - 9870327
Alignment:
| Q |
161 |
caaataatttgtatattatgaatgtttattaattgatatagatactgctcttggatgaaat |
221 |
Q |
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| T |
9870387 |
caaataatttgtatattatgaatgtttattaattgatatagatactgctcttggatgaaat |
9870327 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 161 - 221
Target Start/End: Original strand, 9865928 - 9865988
Alignment:
| Q |
161 |
caaataatttgtatattatgaatgtttattaattgatatagatactgctcttggatgaaat |
221 |
Q |
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| T |
9865928 |
caaataatttgtatattatgaatgtttattaattgatataaatacccctcttggataaaat |
9865988 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 81
Target Start/End: Complemental strand, 9906466 - 9906395
Alignment:
| Q |
9 |
ccttctataggaaaaaagtgcattatctattgaaaaatgtaaagtgtgtttttcatgtagtagtccattagtc |
81 |
Q |
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| T |
9906466 |
ccttctataggaaaaaa-tatactatttattgaaaaatgtaaagtgtattttttatgtaattgtccactagtc |
9906395 |
T |
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