View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14679_low_2 (Length: 465)
Name: NF14679_low_2
Description: NF14679
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14679_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 393; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 11 - 448
Target Start/End: Original strand, 34816105 - 34816554
Alignment:
| Q |
11 |
agcaaagggaaatcaaattcagaaaaagaaaatgtaaatgtgactaacttggtaataacttaaaggccctaacttaaactatccaaagtttcaagccatg |
110 |
Q |
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| T |
34816105 |
agcaaagggaaatcaaattcagaaaaagaaaatgtaaatgtgactaacttggtaataacttaaaggccctaacttaaactatccaaagtttcaagccatg |
34816204 |
T |
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| Q |
111 |
cagacaagcctaatgacttttctatatcatagagagtggaacttactgatgacattataatcaaataaggaaaaacaatcctatgtttgtaaatataggg |
210 |
Q |
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| T |
34816205 |
cagacaagcctaatgacttttctatatcatagagagtggaacttactgatgacattataatcaaataaggaaaaacaatcctatgtttgtaaatataggg |
34816304 |
T |
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| Q |
211 |
aaaagacaaatcaagctgtagccataataccaatcagatacaggggagtcaaaaacttgatcagtagttcaattaggatatctaaactttcattcatata |
310 |
Q |
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| T |
34816305 |
aaaagacaaatcaagctgtagccataataccaatcagatacaggggagtcaaaaacttgatcaatagttcaattaggatatctaaactttcattcatata |
34816404 |
T |
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| Q |
311 |
tgcaaacgatcaaaggtttgacagaacaattaattcgaatgagaaggctataatgacagcgacaaattgttctcgtgataatcacac------------t |
398 |
Q |
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| T |
34816405 |
tgcaaacgattaaaggtttgacagaagaattaattcgaatgagaagactataatgacagcgacaaattgttctcgtgataatcacacttattcttttctt |
34816504 |
T |
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| Q |
399 |
tattctttggcagtgacaaatcgtttgtgtgacaaatttcatgttttagt |
448 |
Q |
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| T |
34816505 |
tattctttggcagtgacaaatcgtttgtgtgacaaatttcatgttttagt |
34816554 |
T |
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Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 221 - 291
Target Start/End: Original strand, 28122437 - 28122507
Alignment:
| Q |
221 |
tcaagctgtagccataataccaatcagatacaggggagtcaaaaacttgatcagtagttcaattaggatat |
291 |
Q |
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| T |
28122437 |
tcaagttgtagccattagaccaagaagctataggggagtcaaaaacttgatcaatggttcacttaggatat |
28122507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 163 - 243
Target Start/End: Original strand, 28177058 - 28177137
Alignment:
| Q |
163 |
cattataatcaaataaggaaaaacaatcctatgtttgtaaatatagggaaaagacaaatcaagctgtagccataataccaa |
243 |
Q |
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| T |
28177058 |
cattataatcaaataa-caaaaacgatcctaagtttgcaagtatagtgaaaaggaaaatcaagttgcagccataagaccaa |
28177137 |
T |
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