View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14679_low_4 (Length: 418)
Name: NF14679_low_4
Description: NF14679
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14679_low_4 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 280; Significance: 1e-156; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 34 - 392
Target Start/End: Original strand, 32869129 - 32869488
Alignment:
| Q |
34 |
ttcttcttcaagcattgcatttggctccagcaagagcacgtttagctatgaggagttcatgtacgcgacgcatggcttctctgatgctaactacctagga |
133 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||| ||||| | | ||| ||| ||||||||||||||||||||||||||||| |
|
|
| T |
32869129 |
ttcttcttcaagcattgcatttggctccagcaagagcatgtttagctataaggagctttgggacggaacggatggcttctctgatgctaactacctagga |
32869228 |
T |
|
| Q |
134 |
aaagggggatttggatctgtacacaaaggtattctccttgatggtaaagaggttgctgttaagcagctgaaagctggtagcagtcaaggagaaagcgaat |
233 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
32869229 |
aaagggggatttggatctgtacacaaaggtattctccctgatggtaaagagattgctgttaagcagctgaaagctgatagcagtcaaggagaaagcgaat |
32869328 |
T |
|
| Q |
234 |
ttaaagctgaagttgagattattagccgtgttcatcacaaacatcttgtctctcttgttggatactacagcactgataatgagatgctacttgcttatga |
333 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| | |||||||||||||||||||||| |
|
|
| T |
32869329 |
ttaaagctgaagttgagattattagccgtgttcatcacaaacatcttgtctctcttgttggatactgcagcgctggttatgagatgctacttgcttatga |
32869428 |
T |
|
| Q |
334 |
atttgttcctaacaaaacattggaattccatttacacggtaca-ttttgtttttggtcac |
392 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||| |
|
|
| T |
32869429 |
atttgttcctaacaaaacattggaattccatttacatggtacatttttgtttttggtcac |
32869488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 18 - 387
Target Start/End: Original strand, 32902595 - 32902964
Alignment:
| Q |
18 |
gcgaactgcttccacattcttcttcaagcattgcatttggctccagcaagagcacgtttagctatgaggagttcatgtacgcgacgcatggcttctctga |
117 |
Q |
| |
|
||||||||||||||| | ||||| || ||||||||||| ||||| | || |||||||||| ||||||||||| | || || | || |||||||| |
|
|
| T |
32902595 |
gcgaactgcttccacctccttctccaggcattgcatttagctccggaaaaagcacgtttacatatgaggagttggcgcgtgcaaccgacggtttctctga |
32902694 |
T |
|
| Q |
118 |
tgctaactacctaggaaaagggggatttggatctgtacacaaaggtattctccttgatggtaaagaggttgctgttaagcagctgaaagctggtagcagt |
217 |
Q |
| |
|
||||||| ||| || |||| |||||||||| ||| || | ||||||||||| | ||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
32902695 |
tgctaacctcctcggtcaaggtggatttggatatgtgcatagaggtattctccctaatggtaaagaggttgctgttaagcagctgaaagctggtagcgga |
32902794 |
T |
|
| Q |
218 |
caaggagaaagcgaatttaaagctgaagttgagattattagccgtgttcatcacaaacatcttgtctctcttgttggatactacagcactgataatgaga |
317 |
Q |
| |
|
||||||||| |||||||| |||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| |||||||| | ||| |
|
|
| T |
32902795 |
caaggagaacgcgaatttcaagctgaagttgagattattagccgtgttcatcataaacatcttgtttctcttgttggatactgcagcactgggtttcaga |
32902894 |
T |
|
| Q |
318 |
tgctacttgcttatgaatttgttcctaacaaaacattggaattccatttacacggtacattttgtttttg |
387 |
Q |
| |
|
|| |||| ||| ||||||||||||||||| || |||||||||||||||| ||||||||||||||||| |
|
|
| T |
32902895 |
gacttcttgtttacgaatttgttcctaacaatactctggaattccatttacatggtacattttgtttttg |
32902964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University