View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14679_low_5 (Length: 394)
Name: NF14679_low_5
Description: NF14679
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14679_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 353; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 13 - 377
Target Start/End: Complemental strand, 7168017 - 7167653
Alignment:
| Q |
13 |
ataatactacaagaaatataacaaaaaatgaagataaatgagtcttattatcattaacaaatatatattaattatcacacacataagaaattaattttac |
112 |
Q |
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| T |
7168017 |
ataatactacaagaaatataacaaaaaatgaagataaatgagtcttattatcattaacaaatatatattaattatcacacacataagaaattaattttac |
7167918 |
T |
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| Q |
113 |
ccaatcaaattttcccgaagttctttttctacattgtacctcccattgatcaagatttgatgataaattttctgtatttgggaaagtcgttgcatctatt |
212 |
Q |
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| T |
7167917 |
ccaatcaaattttcccgaagttctttttctacattgtacctcccattgatcaagatttgatgataaactttctgtatttgggaaagtcgttgcatctatt |
7167818 |
T |
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| Q |
213 |
ggaaagtaaaatgatataatctccttgctgattaatatggttttcaaccgccttcttctatgtggttcctatcaaacaaaaccatcaatacaatatgtta |
312 |
Q |
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| T |
7167817 |
ggaaagtaaaatgatataatctccttgttgattaatatggttttcaaccgccttcttctatgtggttcctatcaaacaaaaccatcaatacaatatgtta |
7167718 |
T |
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| Q |
313 |
gaacaataataaaaatgttataacaaataaatgaatagtaagtttcttaattactcaatgcattc |
377 |
Q |
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| T |
7167717 |
gaacaatcataaaaatgttataacaaataaatgaatagtaagtttcttaattactcaatgcattc |
7167653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 97 - 372
Target Start/End: Complemental strand, 7177898 - 7177620
Alignment:
| Q |
97 |
aagaaattaattttacccaatcaaattttcccgaagttctttttctacattgtacctcccattgatcaagatttgatgataaattttctgtatttgggaa |
196 |
Q |
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| T |
7177898 |
aagaaattatttttaccgtatctaatgttcccgaacttctttttctacattctacctcccattgatgaagatttgatgataaattttctgtgtttgggaa |
7177799 |
T |
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| Q |
197 |
agtcgttgcatctattggaaagtaaaatgatataatctccttgctgattaatatggttttcaa---ccgccttcttctatgtggttcctatcaaacaaaa |
293 |
Q |
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||||||||||||||||||||||| |||||||||||||||||| ||||| ||||| ||| |||| |||| |||||||||||||||||||||||||||| |
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| T |
7177798 |
agtcgttgcatctattggaaagtgaaatgatataatctcctttctgatcaatattgttgtcaaaattcgccctcttctatgtggttcctatcaaacaaaa |
7177699 |
T |
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| Q |
294 |
ccatcaatacaatatgttagaacaataataaaaatgttataacaaataaatgaatagtaagtttcttaattactcaatg |
372 |
Q |
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| T |
7177698 |
gcatcaatacaatatgttagaacaataattgaaatgttataacaaataaatgaattgtaggtttcttagttactcaatg |
7177620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 327 - 377
Target Start/End: Original strand, 46491766 - 46491816
Alignment:
| Q |
327 |
atgttataacaaataaatgaatagtaagtttcttaattactcaatgcattc |
377 |
Q |
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||||||||||||||||||||||| || ||||||||||||||||||| |||| |
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| T |
46491766 |
atgttataacaaataaatgaataatatgtttcttaattactcaatgtattc |
46491816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 35 - 79
Target Start/End: Complemental strand, 7177976 - 7177932
Alignment:
| Q |
35 |
aaaaaatgaagataaatgagtcttattatcattaacaaatatata |
79 |
Q |
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| T |
7177976 |
aaaaaatgaagataaatgagtgttgttaacattgacaaatatata |
7177932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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