View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14679_low_6 (Length: 381)

Name: NF14679_low_6
Description: NF14679
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14679_low_6
NF14679_low_6
[»] chr8 (10 HSPs)
chr8 (158-369)||(3423669-3423881)
chr8 (18-129)||(3423913-3424024)
chr8 (171-316)||(34653276-34653420)
chr8 (202-292)||(13636244-13636334)
chr8 (202-292)||(13736657-13736747)
chr8 (177-283)||(24334458-24334564)
chr8 (158-252)||(22488845-22488939)
chr8 (180-293)||(41086819-41086932)
chr8 (211-282)||(3670555-3670626)
chr8 (193-282)||(44167176-44167265)
[»] chr2 (12 HSPs)
chr2 (158-294)||(16209793-16209929)
chr2 (191-293)||(4818743-4818843)
chr2 (199-304)||(29140163-29140269)
chr2 (212-294)||(38373365-38373447)
chr2 (222-283)||(19028478-19028539)
chr2 (193-294)||(30554532-30554638)
chr2 (180-270)||(14818824-14818914)
chr2 (205-278)||(4604675-4604747)
chr2 (158-254)||(8793850-8793946)
chr2 (237-300)||(18967757-18967820)
chr2 (177-293)||(34466981-34467096)
chr2 (222-294)||(35005222-35005294)
[»] chr7 (9 HSPs)
chr7 (169-294)||(45411265-45411390)
chr7 (182-282)||(46288819-46288919)
chr7 (196-286)||(40024192-40024282)
chr7 (238-299)||(21946151-21946212)
chr7 (163-283)||(2256404-2256523)
chr7 (158-292)||(23070195-23070329)
chr7 (180-251)||(23705039-23705110)
chr7 (215-286)||(31245262-31245333)
chr7 (216-281)||(12139824-12139887)
[»] chr1 (10 HSPs)
chr1 (178-311)||(30264067-30264205)
chr1 (178-286)||(30350735-30350843)
chr1 (158-277)||(9552818-9552937)
chr1 (168-292)||(46536653-46536777)
chr1 (221-292)||(26768708-26768778)
chr1 (194-291)||(12188639-12188736)
chr1 (199-254)||(50014189-50014244)
chr1 (216-294)||(8772434-8772512)
chr1 (221-253)||(52426245-52426277)
chr1 (232-293)||(16632750-16632811)
[»] chr5 (9 HSPs)
chr5 (163-304)||(30251934-30252075)
chr5 (169-285)||(1637963-1638079)
chr5 (194-286)||(26402019-26402111)
chr5 (216-292)||(10418601-10418677)
chr5 (158-210)||(20429799-20429851)
chr5 (231-294)||(25731219-25731282)
chr5 (178-294)||(12487100-12487217)
chr5 (158-246)||(34596489-34596578)
chr5 (193-294)||(42641116-42641217)
[»] chr3 (11 HSPs)
chr3 (159-292)||(35744679-35744814)
chr3 (198-319)||(20137590-20137709)
chr3 (165-263)||(40394905-40395003)
chr3 (194-292)||(47510750-47510848)
chr3 (193-281)||(29398268-29398356)
chr3 (198-319)||(23278016-23278135)
chr3 (225-297)||(41632026-41632098)
chr3 (178-253)||(11529304-11529379)
chr3 (212-254)||(42426246-42426288)
chr3 (158-294)||(4195306-4195442)
chr3 (208-292)||(44765299-44765383)
[»] chr4 (11 HSPs)
chr4 (158-294)||(16502389-16502524)
chr4 (194-294)||(14124203-14124303)
chr4 (202-286)||(51088916-51089000)
chr4 (194-254)||(2392597-2392657)
chr4 (158-210)||(5324605-5324657)
chr4 (199-319)||(34341398-34341518)
chr4 (222-253)||(32906156-32906187)
chr4 (163-297)||(41259984-41260118)
chr4 (180-256)||(53650078-53650155)
chr4 (180-292)||(33027147-33027258)
chr4 (225-261)||(42009690-42009726)
[»] chr6 (3 HSPs)
chr6 (166-285)||(2223669-2223788)
chr6 (194-304)||(23131454-23131564)
chr6 (212-294)||(29694306-29694388)
[»] scaffold0007 (1 HSPs)
scaffold0007 (216-293)||(246547-246624)


Alignment Details
Target: chr8 (Bit Score: 144; Significance: 1e-75; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 158 - 369
Target Start/End: Complemental strand, 3423881 - 3423669
Alignment:
Q  158 ctaatcagtgccttaagggtaatggttaaaaaatttattagtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaa 257  Q
    ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||     
T  3423881 ctaatcagtgccttaagggtaatggttaagaaattcattagtagaaattatgttttagaaatgcaagtttttatttttgtcttagcaataattacacaag 3423782  T
Q  258 ttttagttacaaagttacttattttagtattttaaccgatacctcaacgacactagttagca-nnnnnnnnnnngaacaaaatttgagatattatcccga 356  Q
    ||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||            ||||||||||||||||||||||||||    
T  3423781 ttttagttacaaaattacttattttagtactttaaccgatacctcaacgacactagttagcatttttttttttggaacaaaatttgagatattatcccga 3423682  T
Q  357 tttacttgatatt 369  Q
    ||||| |||||||    
T  3423681 tttacgtgatatt 3423669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 18 - 129
Target Start/End: Complemental strand, 3424024 - 3423913
Alignment:
Q  18 tatacattgtctagataagcaatcatgtggctaacaatagcaagacatagaacttgttgattgggagaaaacaagcattatttgtgaaattatgggtctt 117  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||    
T  3424024 tatacattgtctagttaagcaatcatgtggctaacaatagcaagacatagaacttgttgaatgggagaaaacaagcattatttgtgaaattgtgggtctt 3423925  T
Q  118 aattataccgca 129  Q
    ||||||||||||    
T  3423924 aattataccgca 3423913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 171 - 316
Target Start/End: Original strand, 34653276 - 34653420
Alignment:
Q  171 taagggtaatggttaaaaaatttattagtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaattttagttacaaa 270  Q
    |||||| |||||||||  ||| |||||||||||||||||| ||| ||| ||||||||||| ||||||||| ||||||||||||||| |||| ||   ||     
T  34653276 taagggcaatggttaaggaatctattagtagaaattatgtcttgaaaacgcaagtttttacttttgtctt-gcaataattacacaactttttgtagtaat 34653374  T
Q  271 gttacttattttagtattttaaccgatacctcaacgacactagtta 316  Q
    |||||||||||||||| ||||| | || |||||| | |||||||||    
T  34653375 gttacttattttagtactttaatcaatgcctcaagggcactagtta 34653420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 202 - 292
Target Start/End: Complemental strand, 13636334 - 13636244
Alignment:
Q  202 aaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaattttagttacaaagttacttattttagtattttaa 292  Q
    ||||| ||| ||||||||||| ||||||| |||||||||| |||||| ||||||| |||| ||||||||||||||||||||| || |||||    
T  13636334 aaattttgtcttggaaatgcatgtttttacttttgtcttaacaataactacacaactttttgttacaaagttacttattttaatactttaa 13636244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 202 - 292
Target Start/End: Complemental strand, 13736747 - 13736657
Alignment:
Q  202 aaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaattttagttacaaagttacttattttagtattttaa 292  Q
    ||||| ||| ||||||||||| ||||||| |||||||||| |||||| ||||||| |||| ||||||||||||||||||||| || |||||    
T  13736747 aaattttgtcttggaaatgcatgtttttacttttgtcttaacaataactacacaactttttgttacaaagttacttattttaatactttaa 13736657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 177 - 283
Target Start/End: Complemental strand, 24334564 - 24334458
Alignment:
Q  177 taatggttaaaaaatttattagtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaattttagttacaaagttact 276  Q
    ||||||||||  |||| ||||||||||||| ||||||  |||| |||||||||| |||| |||| | ||||||||||||| ||||  || |||| || ||    
T  24334564 taatggttaaggaattcattagtagaaattttgttttaaaaatacaagtttttacttttctcttggtaataattacacaactttttattgcaaaattgct 24334465  T
Q  277 tatttta 283  Q
    |||||||    
T  24334464 tatttta 24334458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 158 - 252
Target Start/End: Complemental strand, 22488939 - 22488845
Alignment:
Q  158 ctaatcagtgccttaagggtaatggttaaaaaatttattagtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattac 252  Q
    |||| ||||||| ||||||||||||||||  | |  |||| |||||| | |||||||||||| |||||||| | |||| ||||||||||| ||||    
T  22488939 ctaaccagtgccctaagggtaatggttaaggattccattaatagaaactttgttttggaaatacaagttttcacttttttcttagcaatagttac 22488845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 180 - 293
Target Start/End: Original strand, 41086819 - 41086932
Alignment:
Q  180 tggttaaaaaatttattagtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaa-attttagttacaaagttactta 278  Q
    |||||||| ||| |||| ||||||| | ||| |||||||| ||| |||||| |||| |||| | ||||||||||||| |||||| ||| ||| |||||||    
T  41086819 tggttaaagaatctatttgtagaaactttgtcttggaaatacaaatttttacttttatcttggtaataattacacaacatttta-ttaaaaaattactta 41086917  T
Q  279 ttttagtattttaac 293  Q
    |||| ||| ||||||    
T  41086918 ttttggtactttaac 41086932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 211 - 282
Target Start/End: Complemental strand, 3670626 - 3670555
Alignment:
Q  211 tttggaaatgcaagtttttatttttgtcttagcaataattacacaaattttagttacaaagttacttatttt 282  Q
    ||||||||| |||||||||| |||||| ||| |||||||||||||| ||||   || ||| |||||||||||    
T  3670626 tttggaaatacaagtttttaattttgttttaacaataattacacaactttttaataaaaacttacttatttt 3670555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 282
Target Start/End: Original strand, 44167176 - 44167265
Alignment:
Q  193 tattagtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaattttagttacaaagttacttatttt 282  Q
    ||||| |||||| | ||| |||||||| ||| | |||| |||| |||||||||| ||||||||| |||| | | |||| |||||||||||    
T  44167176 tattaatagaaactttgtcttggaaatacaaatctttacttttttcttagcaatgattacacaacttttcgatgcaaacttacttatttt 44167265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 69; Significance: 7e-31; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 158 - 294
Target Start/End: Original strand, 16209793 - 16209929
Alignment:
Q  158 ctaatcagtgccttaagggtaatggttaaaaaatttattagtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaa 257  Q
    |||||||||| |||||||| ||||||||| ||||  | ||||||||| | |||||||||||| ||||| |||| |||||||||||||||| ||||||||     
T  16209793 ctaatcagtgtcttaagggcaatggttaagaaatccaatagtagaaactttgttttggaaatacaagtgtttacttttgtcttagcaatagttacacaac 16209892  T
Q  258 ttttagttacaaagttacttattttagtattttaacc 294  Q
    |||| |||  ||||||||||||||||||| |||||||    
T  16209893 tttttgttttaaagttacttattttagtactttaacc 16209929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 191 - 293
Target Start/End: Original strand, 4818743 - 4818843
Alignment:
Q  191 tttattagtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaattttagttacaaagttacttattttagtatttt 290  Q
    |||||||||||||||| || || |||||| |||||||||| |||| |||||  ||||||||||||| ||||| || |||||||||||||||||||| |||    
T  4818743 tttattagtagaaattttgctt-ggaaattcaagtttttacttttatcttaataataattacacaattttta-tttcaaagttacttattttagtacttt 4818840  T
Q  291 aac 293  Q
    |||    
T  4818841 aac 4818843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 199 - 304
Target Start/End: Complemental strand, 29140269 - 29140163
Alignment:
Q  199 tagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaa-attttagttacaaagttacttattttagtattttaaccgat 297  Q
    |||||||| |||  || |||| |||||||||||||||  |||||||||||||||||||  |||| ||| |||| ||||||||||||||| ||||||| ||    
T  29140269 tagaaattttgtcctgaaaatacaagtttttattttttccttagcaataattacacaatttttttgtttcaaaattacttattttagtactttaaccaat 29140170  T
Q  298 acctcaa 304  Q
    | |||||    
T  29140169 atctcaa 29140163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 212 - 294
Target Start/End: Original strand, 38373365 - 38373447
Alignment:
Q  212 ttggaaatgcaagtttttatttttgtcttagcaataattacacaaattttagttacaaagttacttattttagtattttaacc 294  Q
    |||||||| |||||||||| |||| |||||||||||||||||| | |||| | | |||| |||||||||||| ||||||||||    
T  38373365 ttggaaatacaagtttttacttttatcttagcaataattacaccatttttcgatgcaaatttacttattttaatattttaacc 38373447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 222 - 283
Target Start/End: Original strand, 19028478 - 19028539
Alignment:
Q  222 aagtttttatttttgtcttagcaataattacacaaattttagttacaaagttacttatttta 283  Q
    ||||||||| ||||||||||| ||||||||||||| |||| ||| |||||||||||||||||    
T  19028478 aagtttttacttttgtcttagtaataattacacaactttttgttgcaaagttacttatttta 19028539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 193 - 294
Target Start/End: Complemental strand, 30554638 - 30554532
Alignment:
Q  193 tattagtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaattttagttac-----aaagttacttattttagtat 287  Q
    |||||||||||||||||| ||| |||||||  |||||| |||||||||| || ||||||||||| |||| ||| |     ||||| |||||||||| |||    
T  30554638 tattagtagaaattatgtcttgaaaatgcacatttttacttttgtcttaacattaattacacaattttttgttgcaaattaaagtaacttattttaatat 30554539  T
Q  288 tttaacc 294  Q
    |||||||    
T  30554538 tttaacc 30554532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 180 - 270
Target Start/End: Complemental strand, 14818914 - 14818824
Alignment:
Q  180 tggttaaaaaatttattagtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaattttagttacaaa 270  Q
    |||||||| ||| |||||| ||||| |  |||||| |||||||| |||||| |||||| ||||||||||||| |||| |||| | ||||||    
T  14818914 tggttaaagaatctattagaagaaacttggttttgaaaatgcaaatttttacttttgttttagcaataattatacaattttttgatacaaa 14818824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 205 - 278
Target Start/End: Complemental strand, 4604747 - 4604675
Alignment:
Q  205 ttatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaattttagttacaaagttactta 278  Q
    |||||| ||||||||||||||||| |||| |||||||||| ||||||||||| |||| ||| |  |||||||||    
T  4604747 ttatgtcttggaaatgcaagtttt-atttctgtcttagcagtaattacacaactttttgttgcttagttactta 4604675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 158 - 254
Target Start/End: Complemental strand, 8793946 - 8793850
Alignment:
Q  158 ctaatcagtgccttaagggtaatggttaaaaaatttattagtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacac 254  Q
    |||| ||||||| |||||| | |||||||  ||| || || |||||| | ||| ||||||||  ||||||||||||||||||| |||||||| ||||    
T  8793946 ctaaccagtgccctaagggcattggttaaggaatctactaatagaaactttgtcttggaaatataagtttttatttttgtcttggcaataatcacac 8793850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 237 - 300
Target Start/End: Original strand, 18967757 - 18967820
Alignment:
Q  237 tcttagcaataattacacaaattttagttacaaagttacttattttagtattttaaccgatacc 300  Q
    ||||| |||||||||||||| |||| ||| |||| |||| ||||||| |||||||||| |||||    
T  18967757 tcttaacaataattacacaacttttcgttgcaaacttacgtattttaatattttaaccaatacc 18967820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 177 - 293
Target Start/End: Original strand, 34466981 - 34467096
Alignment:
Q  177 taatggttaaaaaatttattagtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaattttagttacaaagttact 276  Q
    |||| ||||| ||||| ||||||| ||| | ||||||| ||||| || |||||| |||  | |||||||||||||||||| |||   ||| ||| |||||    
T  34466981 taatagttaagaaattcattagtaaaaaatttgttttgaaaatgtaaatttttagttta-tgttagcaataattacacaactttatattataaatttact 34467079  T
Q  277 tattttagtattttaac 293  Q
    ||||||| || ||||||    
T  34467080 tattttaatactttaac 34467096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 222 - 294
Target Start/End: Complemental strand, 35005294 - 35005222
Alignment:
Q  222 aagtttttatttttgtcttagcaataattacacaaattttagttacaaagttacttattttagtattttaacc 294  Q
    |||| |||| |||| |||||||||| ||||||| | |||| | | |||| ||||||||||||||| |||||||    
T  35005294 aagtctttacttttttcttagcaatgattacaccacttttcgatgcaaacttacttattttagtactttaacc 35005222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 62; Significance: 1e-26; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 169 - 294
Target Start/End: Complemental strand, 45411390 - 45411265
Alignment:
Q  169 cttaagggtaatggttaaaaaatttattagtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaattttagttaca 268  Q
    |||||| | |||||||||| |||| |||  ||||||||||||||| |||||||||||||||| |||| ||| | ||||||||||| || |||| |||| |    
T  45411390 cttaagagcaatggttaaagaattcatttatagaaattatgttttagaaatgcaagtttttacttttatctcaacaataattacataactttttgttata 45411291  T
Q  269 aagttacttattttagtattttaacc 294  Q
    |||||||||||||||||| |||||||    
T  45411290 aagttacttattttagtactttaacc 45411265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 182 - 282
Target Start/End: Original strand, 46288819 - 46288919
Alignment:
Q  182 gttaaaaaatttattagtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaattttagttacaaagttacttattt 281  Q
    ||||||||||||||||||||||||| ||| ||  |||||||||||||| ||||||||||||||||||||||| || ||||  || |||| || |||||||    
T  46288819 gttaaaaaatttattagtagaaattttgtcttaaaaatgcaagtttttgtttttgtcttagcaataattacataattttttattgcaaaattgcttattt 46288918  T
Q  282 t 282  Q
    |    
T  46288919 t 46288919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 196 - 286
Target Start/End: Original strand, 40024192 - 40024282
Alignment:
Q  196 tagtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaattttagttacaaagttacttattttagta 286  Q
    ||||| ||||||||||||| ||||||||||||||| |||| | |||||||||||||||||| ||||  || ||||||||||||| ||||||    
T  40024192 tagtataaattatgttttgcaaatgcaagtttttacttttattttagcaataattacacaactttttattgcaaagttacttatgttagta 40024282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 238 - 299
Target Start/End: Complemental strand, 21946212 - 21946151
Alignment:
Q  238 cttagcaataattacacaaattttagttacaaagttacttattttagtattttaaccgatac 299  Q
    ||||| ||||||||||||| ||||  || |||||||||||||||||||||||||||| ||||    
T  21946212 cttagtaataattacacaactttttattgcaaagttacttattttagtattttaaccaatac 21946151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 163 - 283
Target Start/End: Original strand, 2256404 - 2256523
Alignment:
Q  163 cagtgccttaagggtaatggttaaaaaatttattagtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaatttta 262  Q
    ||||||||||||||||||| ||||  | |  |||| |||||| ||||| || ||||||||||| ||||||||| |||||| ||| ||||||| | ||||     
T  2256404 cagtgccttaagggtaatgattaaggattccattaatagaaactatgtcttagaaatgcaagtatttattttt-tcttaggaatgattacaccacttttc 2256502  T
Q  263 gttacaaagttacttatttta 283  Q
    | | |||| ||||||||||||    
T  2256503 gatgcaaacttacttatttta 2256523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 158 - 292
Target Start/End: Original strand, 23070195 - 23070329
Alignment:
Q  158 ctaatcagtgccttaagggtaatggttaaaaaatttattagtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaa 257  Q
    |||| ||||||| |||||  ||||||||| || |  |||| |||||| | ||| |||||||| ||||| |||| |||| |||||||||| ||||||| |     
T  23070195 ctaaccagtgccctaaggacaatggttaagaattccattaatagaaactttgtcttggaaatacaagtctttacttttttcttagcaatgattacaccac 23070294  T
Q  258 ttttagttacaaagttacttattttagtattttaa 292  Q
    |||| | | |||| |||||||||||| || |||||    
T  23070295 ttttcgatgcaaatttacttattttaatactttaa 23070329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 180 - 251
Target Start/End: Complemental strand, 23705110 - 23705039
Alignment:
Q  180 tggttaaaaaatttattagtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataatta 251  Q
    |||||||| ||| ||||||| |||||| ||| ||||||||||| ||||||| ||||  |||| |||||||||    
T  23705110 tggttaaagaatctattagttgaaattttgtcttggaaatgcatgtttttactttttccttaacaataatta 23705039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 215 - 286
Target Start/End: Original strand, 31245262 - 31245333
Alignment:
Q  215 gaaatgcaagtttttatttttgtcttagcaataattacacaaattttagttacaaagttacttattttagta 286  Q
    ||||| ||||| || | ||||||||||||||||||||||| | |||| | | |||| |||||||||||||||    
T  31245262 gaaatacaagtcttcacttttgtcttagcaataattacaccatttttcgatgcaaacttacttattttagta 31245333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 216 - 281
Target Start/End: Original strand, 12139824 - 12139887
Alignment:
Q  216 aaatgcaagtttttatttttgtcttagcaataattacacaaattttagttacaaagttacttattt 281  Q
    |||| |||||||||||||  |||| |||||||||||||||| ||||  || |||||||||||||||    
T  12139824 aaatacaagtttttattt--gtctcagcaataattacacaactttttatttcaaagttacttattt 12139887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 55; Significance: 2e-22; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 178 - 311
Target Start/End: Original strand, 30264067 - 30264205
Alignment:
Q  178 aatggttaaaaaatttattagtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaa-----taattacacaaattttagttacaaagt 272  Q
    ||||||||| ||||||||||||||||||| ||||||| ||||| ||||||||| |||||||||| |||     ||||||||||| |||| |||  |||||    
T  30264067 aatggttaagaaatttattagtagaaattttgttttgaaaatgtaagtttttacttttgtcttatcaataatttaattacacaattttttgttgtaaagt 30264166  T
Q  273 tacttattttagtattttaaccgatacctcaacgacact 311  Q
    ||||||||||| || ||||||  ||| ||||| ||||||    
T  30264167 tacttattttaataatttaacaaatatctcaatgacact 30264205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 178 - 286
Target Start/End: Complemental strand, 30350843 - 30350735
Alignment:
Q  178 aatggttaaaaaatttattagtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaattttagttacaaagttactt 277  Q
    |||||||||  ||| ||||||||| |||||||| ||||||||||||| ||||  |||| |||||||||| ||||||||| | ||  || |||||||||||    
T  30350843 aatggttaaggaatctattagtaggaattatgtcttggaaatgcaagcttttgcttttatcttagcaatgattacacaattgtttattgcaaagttactt 30350744  T
Q  278 attttagta 286  Q
    |||||||||    
T  30350743 attttagta 30350735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 158 - 277
Target Start/End: Complemental strand, 9552937 - 9552818
Alignment:
Q  158 ctaatcagtgccttaagggtaatggttaaaaaatttattagtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaa 257  Q
    |||| ||||| |||||||| |||| ||||| ||| ||||| || |||||   |||||||||||||||| |||| |||||||||| |||||||||||||      
T  9552937 ctaaccagtgtcttaagggcaatgattaaagaatctattaataaaaatttcattttggaaatgcaagtatttacttttgtcttatcaataattacacacc 9552838  T
Q  258 ttttagttacaaagttactt 277  Q
    |||| |||  ||||||||||    
T  9552837 tttttgttgtaaagttactt 9552818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 168 - 292
Target Start/End: Complemental strand, 46536777 - 46536653
Alignment:
Q  168 ccttaagggtaatggttaaaaaatttattagtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaattttagttac 267  Q
    ||||||||  ||| ||||||||||| || |||| ||||| | ||||| |||| |||||||||| |||||||||| |||||| ||||||| |||   || |    
T  46536777 ccttaaggacaattgttaaaaaattcatcagtacaaattctattttgaaaatacaagtttttacttttgtcttatcaataactacacaactttgtattgc 46536678  T
Q  268 aaagttacttattttagtattttaa 292  Q
    ||| |||||||||||| || |||||    
T  46536677 aaaattacttattttaatactttaa 46536653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 221 - 292
Target Start/End: Complemental strand, 26768778 - 26768708
Alignment:
Q  221 caagtttttatttttgtcttagcaataattacacaaattttagttacaaagttacttattttagtattttaa 292  Q
    ||||||||||||||||||||| | ||||| ||||||||||| | |||||| ||||||||||||||| |||||    
T  26768778 caagtttttatttttgtcttatctataatcacacaaatttt-gatacaaatttacttattttagtaatttaa 26768708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 194 - 291
Target Start/End: Complemental strand, 12188736 - 12188639
Alignment:
Q  194 attagtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaattttagttacaaagttacttattttagtatttta 291  Q
    |||| |||||| | ||| |||||||| ||| |||||| |||| |||||||||||||||||| | ||||   |||||| ||||||||||||||| ||||    
T  12188736 attaatagaaactttgtcttggaaatacaaatttttacttttttcttagcaataattacaccatttttcaatacaaaattacttattttagtacttta 12188639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 199 - 254
Target Start/End: Original strand, 50014189 - 50014244
Alignment:
Q  199 tagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacac 254  Q
    |||||| | |||||| ||||| ||| ||||||||||||||||||||||||||||||    
T  50014189 tagaaactttgtttttgaaatacaaatttttatttttgtcttagcaataattacac 50014244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 216 - 294
Target Start/End: Original strand, 8772434 - 8772512
Alignment:
Q  216 aaatgcaagtttttatttttgtcttagcaataattacacaaattttagttacaaagttacttattttagtattttaacc 294  Q
    |||| ||||| |||| ||||||||| ||||||||||||| | |||| | | |||| ||||||||||||||| |||||||    
T  8772434 aaatacaagtctttacttttgtcttggcaataattacaccacttttcgatgcaaatttacttattttagtactttaacc 8772512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 221 - 253
Target Start/End: Complemental strand, 52426277 - 52426245
Alignment:
Q  221 caagtttttatttttgtcttagcaataattaca 253  Q
    |||||||||||||||||||||||||||||||||    
T  52426277 caagtttttatttttgtcttagcaataattaca 52426245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 293
Target Start/End: Original strand, 16632750 - 16632811
Alignment:
Q  232 ttttgtcttagcaataattacacaaattttagttacaaagttacttattttagtattttaac 293  Q
    ||||||||| | ||||||||||||| ||||  |||||||||| ||||||||| || ||||||    
T  16632750 ttttgtcttggtaataattacacaattttttattacaaagttgcttattttaatactttaac 16632811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 2e-19; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 163 - 304
Target Start/End: Original strand, 30251934 - 30252075
Alignment:
Q  163 cagtgccttaagggtaatggttaaaaaatttattagtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaatttta 262  Q
    ||||||| |||||| |||||||||  | |  |||| |||||||| ||| |||||||| ||||| |||| |||| |||||||||||||||||| | ||||     
T  30251934 cagtgccctaagggcaatggttaaggattccattaatagaaattttgtcttggaaatacaagtctttacttttttcttagcaataattacaccacttttc 30252033  T
Q  263 gttacaaagttacttattttagtattttaaccgatacctcaa 304  Q
    | ||||||  || ||||||||||| ||||||| |||||||||    
T  30252034 gatacaaatatatttattttagtactttaaccaatacctcaa 30252075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 169 - 285
Target Start/End: Original strand, 1637963 - 1638079
Alignment:
Q  169 cttaagggtaatggttaaaaaatttattagtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaattttagttaca 268  Q
    |||||||| |||||||||  | | ||||| || ||||| ||| |||||||| ||| |||||| |||| |||||||||||||||||||| |||| | | ||    
T  1637963 cttaagggcaatggttaatgattctattaatataaattttgtcttggaaatacaaatttttacttttttcttagcaataattacacaactttttgatgca 1638062  T
Q  269 aagttacttattttagt 285  Q
    || ||| ||||||||||    
T  1638063 aacttatttattttagt 1638079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 194 - 286
Target Start/End: Original strand, 26402019 - 26402111
Alignment:
Q  194 attagtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaattttagttacaaagttacttattttagta 286  Q
    ||||||||||||| ||| ||||||||||||| ||| | |||||||||| |||| ||||||||| ||||  ||  ||| |||||||||||||||    
T  26402019 attagtagaaattttgtattggaaatgcaagctttcacttttgtcttaacaatgattacacaactttttattgaaaaattacttattttagta 26402111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 216 - 292
Target Start/End: Complemental strand, 10418677 - 10418601
Alignment:
Q  216 aaatgcaagtttttatttttgtcttagcaataattacacaa-attttagttacaaagttacttattttagtattttaa 292  Q
    |||| ||||||||||||||||| ||| |||||||||||||| |||||| || ||||||||||||||||| || |||||    
T  10418677 aaatacaagtttttatttttgttttaacaataattacacaacattttattt-caaagttacttattttaatactttaa 10418601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 158 - 210
Target Start/End: Complemental strand, 20429851 - 20429799
Alignment:
Q  158 ctaatcagtgccttaagggtaatggttaaaaaatttattagtagaaattatgt 210  Q
    |||| ||||| | ||| ||||||||||||| ||||||||||||||||||||||    
T  20429851 ctaaccagtgtcctaaaggtaatggttaaagaatttattagtagaaattatgt 20429799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 231 - 294
Target Start/End: Complemental strand, 25731282 - 25731219
Alignment:
Q  231 tttttgtcttagcaataattacacaaattttagttacaaagttacttattttagtattttaacc 294  Q
    ||||| |||||||||||||||||||| ||||   | |||| ||||||||||||||| |||||||    
T  25731282 tttttttcttagcaataattacacaacttttctatgcaaacttacttattttagtactttaacc 25731219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 294
Target Start/End: Original strand, 12487100 - 12487217
Alignment:
Q  178 aatggttaaaaaatttattagtagaaattatgttttggaaatgcaagtttttatttttgtct-tagcaataattacacaaattttagttacaaagttact 276  Q
    |||||||||  ||| |||||||||||||| ||| ||| |||| ||| |||||| ||||||||   | ||||||||||||| | || |||  |||||||||    
T  12487100 aatggttaaggaatctattagtagaaattttgtcttgaaaatacaaatttttacttttgtctcgggtaataattacacaactcttcgttgtaaagttact 12487199  T
Q  277 tattttagtattttaacc 294  Q
    | ||||| || |||||||    
T  12487200 tgttttaatactttaacc 12487217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 246
Target Start/End: Original strand, 34596489 - 34596578
Alignment:
Q  158 ctaatcagtgccttaagggtaatggttaaaaaatttattagtagaaattatgttttggaaatgcaagt-ttttatttttgtcttagcaat 246  Q
    |||| ||||||  ||| ||||||||||| ||| |||||||||| ||||| | | |||| ||| ||||| |||||||||| ||||||||||    
T  34596489 ctaaccagtgctctaaaggtaatggttataaattttattagtaaaaattttatcttgggaatacaagtattttatttttttcttagcaat 34596578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 294
Target Start/End: Complemental strand, 42641217 - 42641116
Alignment:
Q  193 tattagtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaattttagttacaaagttacttattttagtattttaa 292  Q
    ||||| |||||| | ||| ||| |||| ||||| |||| |||| ||||| |||| ||||||| | |||| | | |||| ||||||||||||||| |||||    
T  42641217 tattaatagaaactttgtcttgaaaatacaagtctttacttttttcttatcaatgattacaccatttttcgatgcaaacttacttattttagtactttaa 42641118  T
Q  293 cc 294  Q
    ||    
T  42641117 cc 42641116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 1e-17; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 159 - 292
Target Start/End: Original strand, 35744679 - 35744814
Alignment:
Q  159 taatcagtgccttaagggtaatggttaaaaaatttattagtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaat 258  Q
    ||||||||||  || | ||| ||||||| ||||  |||||||||||| |||| |||||| |||||||||||| |||||||||| ||||||||||||| ||    
T  35744679 taatcagtgcactatgagtattggttaagaaatccattagtagaaatcatgtattggaa-tgcaagtttttacttttgtcttaccaataattacacatat 35744777  T
Q  259 t---ttagttacaaagttacttattttagtattttaa 292  Q
    |   || |||||||| |||||||||||| || |||||    
T  35744778 ttaatttgttacaaaattacttattttaatactttaa 35744814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 198 - 319
Target Start/End: Original strand, 20137590 - 20137709
Alignment:
Q  198 gtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaattttagttacaaagttacttattttagtattttaaccgat 297  Q
    ||||||||| ||| ||||||||| || |||||| |||||||||  ||||||||||   |||||| ||| |||||||||||||||||||| | ||||| ||    
T  20137590 gtagaaattttgtcttggaaatgaaattttttacttttgtcttgacaataattacc--aatttttgttgcaaagttacttattttagtactctaaccaat 20137687  T
Q  298 acctcaacgacactagttagca 319  Q
      | ||| | ||||||||||||    
T  20137688 gtcccaagggcactagttagca 20137709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 165 - 263
Target Start/End: Complemental strand, 40395003 - 40394905
Alignment:
Q  165 gtgccttaagggtaatggttaaaaaatttattagtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaattttag 263  Q
    ||||| ||||| ||||| ||||  |||||||||||||||||| | | ||  ||||| |||||||||||||| | |||| ||||||||||||| ||||||    
T  40395003 gtgccataaggataatgattaaggaatttattagtagaaattttatcttaaaaatgtaagtttttatttttattttagtaataattacacaacttttag 40394905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 194 - 292
Target Start/End: Complemental strand, 47510848 - 47510750
Alignment:
Q  194 attagtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaattttagttacaaagttacttattttagtattttaa 292  Q
    |||| |||||| ||||| |||||||| ||| | ||| ||||| ||||| |||||||||||| | |||| | |||||| ||||||||||||||| |||||    
T  47510848 attaatagaaactatgtcttggaaatacaaatctttgtttttttcttaacaataattacaccatttttcgatacaaacttacttattttagtactttaa 47510750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 193 - 281
Target Start/End: Original strand, 29398268 - 29398356
Alignment:
Q  193 tattagtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaattttagttacaaagttacttattt 281  Q
    |||||||||||||| | |||||||||||||| ||||||| | | |  |||||||| |||||||| |||| |||  ||||||||||||||    
T  29398268 tattagtagaaattttattttggaaatgcaaatttttatctctctaatagcaatagttacacaactttttgttgtaaagttacttattt 29398356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 198 - 319
Target Start/End: Complemental strand, 23278135 - 23278016
Alignment:
Q  198 gtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaattttagttacaaagttacttattttagtattttaaccgat 297  Q
    ||||||||| ||| ||||||||| || |||||| |||||||||  ||||||||||   |||||| ||| |||||||  ||||||||||| | ||||| ||    
T  23278135 gtagaaattctgtcttggaaatgaaattttttacttttgtcttgacaataattacc--aatttttgttgcaaagttgtttattttagtactctaaccaat 23278038  T
Q  298 acctcaacgacactagttagca 319  Q
      ||||| | ||||||||||||    
T  23278037 gtctcaagggcactagttagca 23278016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 297
Target Start/End: Original strand, 41632026 - 41632098
Alignment:
Q  225 tttttatttttgtcttagcaataattacacaaattttagttacaaagttacttattttagtattttaaccgat 297  Q
    |||||||||||||||||| ||||||||||| | ||||  || |||| || |||||||||| ||||||| ||||    
T  41632026 tttttatttttgtcttagtaataattacactattttttattgcaaacttgcttattttagaattttaatcgat 41632098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 178 - 253
Target Start/End: Original strand, 11529304 - 11529379
Alignment:
Q  178 aatggttaaaaaatttattagtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattaca 253  Q
    |||||||||| |||  |||||||||| || ||| ||||| ||||||||||||| |||| |||| | ||||||||||    
T  11529304 aatggttaaagaatccattagtagaagttttgtcttggagatgcaagtttttacttttatcttggtaataattaca 11529379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 212 - 254
Target Start/End: Complemental strand, 42426288 - 42426246
Alignment:
Q  212 ttggaaatgcaagtttttatttttgtcttagcaataattacac 254  Q
    ||||||||  |||||||||||||||||||| ||||||||||||    
T  42426288 ttggaaatataagtttttatttttgtcttaacaataattacac 42426246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 294
Target Start/End: Original strand, 4195306 - 4195442
Alignment:
Q  158 ctaatcagtgccttaagggtaatggttaaaaaatttattagtagaaattatgttttggaaatgcaagttttta-tttttgtcttagcaataattacacaa 256  Q
    |||| |||||||||||||| |||||||||  | |  |||| ||| |||| |||||||||||| ||| | |||| ||||  ||||||||| |||||||| |    
T  4195306 ctaaccagtgccttaagggcaatggttaaggattccattaatagtaattttgttttggaaatacaattctttacttttcttcttagcaa-aattacacca 4195404  T
Q  257 attttagttacaaagttacttattttagtattttaacc 294  Q
     ||||   | |||| ||||||||||||||| |||||||    
T  4195405 tttttttatgcaaacttacttattttagtactttaacc 4195442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 208 - 292
Target Start/End: Original strand, 44765299 - 44765383
Alignment:
Q  208 tgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaattttagttacaaagttacttattttagtattttaa 292  Q
    |||||||||||| ||||| |||| || | |||||||||||||||||| | ||||   | |||| |||||||||||| || |||||    
T  44765299 tgttttggaaatacaagtctttacttatttcttagcaataattacaccacttttcaatgcaaacttacttattttaatactttaa 44765383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 158 - 294
Target Start/End: Original strand, 16502389 - 16502524
Alignment:
Q  158 ctaatcagtgccttaagggtaatggttaaaaaatttattagtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaa 257  Q
    |||| ||||||| |||||| |||||||||  |||  ||||||||||| | ||| |||||||| ||| |||||| |||| |||| |||||| ||||||||     
T  16502389 ctaaccagtgccctaagggcaatggttaaggaatccattagtagaaactttgtcttggaaatacaaattttta-ttttctcttggcaatatttacacaac 16502487  T
Q  258 ttttagttacaaagttacttattttagtattttaacc 294  Q
    |||| |||  | ||||||||||||||||| |||||||    
T  16502488 tttttgttttagagttacttattttagtactttaacc 16502524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 194 - 294
Target Start/End: Complemental strand, 14124303 - 14124203
Alignment:
Q  194 attagtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaattttagttacaaagttacttattttagtattttaac 293  Q
    |||| |||||| | ||||||||||||  ||||||||| |||| ||||||||| |||||||| | |||| | | |||| |||||||||||| || ||||||    
T  14124303 attaatagaaactttgttttggaaatataagtttttacttttttcttagcaaaaattacaccatttttcgatgcaaatttacttattttaatactttaac 14124204  T
Q  294 c 294  Q
    |    
T  14124203 c 14124203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 202 - 286
Target Start/End: Complemental strand, 51089000 - 51088916
Alignment:
Q  202 aaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaattttagttacaaagttacttattttagta 286  Q
    ||||||| | ||| ||||| || |||||| |||| |||||  ||||||||||||| ||||  |||||||||||||||||||||||    
T  51089000 aaattatatgttgaaaatgtaaatttttacttttatcttacaaataattacacaattttttattacaaagttacttattttagta 51088916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 194 - 254
Target Start/End: Original strand, 2392597 - 2392657
Alignment:
Q  194 attagtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacac 254  Q
    ||||||||||| | ||| ||| ||||||||||||||| ||||||||| ||||||| |||||    
T  2392597 attagtagaaactttgtcttgtaaatgcaagtttttacttttgtcttggcaataactacac 2392657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 158 - 210
Target Start/End: Complemental strand, 5324657 - 5324605
Alignment:
Q  158 ctaatcagtgccttaagggtaatggttaaaaaatttattagtagaaattatgt 210  Q
    |||| ||||| | ||| ||||||||||||| ||||||||||||||||||||||    
T  5324657 ctaaccagtgtcctaaaggtaatggttaaagaatttattagtagaaattatgt 5324605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 199 - 319
Target Start/End: Complemental strand, 34341518 - 34341398
Alignment:
Q  199 tagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaattttagttacaaagttacttattttagtattttaaccgata 298  Q
    |||||||| |||| |  |||| |||| ||||| ||||||||||||||||||||||||| ||||   |||||| |||| ||||| || | ||||||| ||     
T  34341518 tagaaattttgttgtaaaaatacaagattttacttttgtcttagcaataattacacaactttttaatacaaacttacatatttgagaactttaaccaatg 34341419  T
Q  299 cctcaacgacactagttagca 319  Q
     |||||  ||||| |||||||    
T  34341418 tctcaagaacactcgttagca 34341398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 222 - 253
Target Start/End: Original strand, 32906156 - 32906187
Alignment:
Q  222 aagtttttatttttgtcttagcaataattaca 253  Q
    ||||||||||||||||||||||||||||||||    
T  32906156 aagtttttatttttgtcttagcaataattaca 32906187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 163 - 297
Target Start/End: Original strand, 41259984 - 41260118
Alignment:
Q  163 cagtgccttaagggtaatggttaaaaaatttattagtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaatttta 262  Q
    ||||||| |||||| |||||||||  | |  |||| |||||| | ||| ||| |||| ||||| ||||||||| | ||| |||| ||||||| | ||||     
T  41259984 cagtgccctaagggcaatggttaaggattccattaatagaaactttgtcttgaaaatacaagtctttattttttttttatcaatgattacaccacttttc 41260083  T
Q  263 gttacaaagttacttattttagtattttaaccgat 297  Q
    | | |||| |||||||||||| || ||||||||||    
T  41260084 gatgcaaacttacttattttaatactttaaccgat 41260118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 256
Target Start/End: Complemental strand, 53650155 - 53650078
Alignment:
Q  180 tggttaaaaaatttattagtagaaattatgttttggaaatgcaag-tttttatttttgtcttagcaataattacacaa 256  Q
    |||||||  |||| ||||||||||||| ||||||| ||||  ||  |||||| ||||||||||||||||| |||||||    
T  53650155 tggttaaggaattcattagtagaaattttgttttgaaaatataaaatttttacttttgtcttagcaataaatacacaa 53650078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 180 - 292
Target Start/End: Original strand, 33027147 - 33027258
Alignment:
Q  180 tggttaaaaaatttattagtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaattttagttacaaagttacttat 279  Q
    ||||||| ||||| ||||||| ||||| ||||||| |||| |||  ||||||| || | |||| |||||||| ||   |||| | |||||| ||||||||    
T  33027147 tggttaagaaattcattagtaaaaattttgttttg-aaatacaaaattttattcttattttagaaataattatactgctttttgatacaaacttacttat 33027245  T
Q  280 tttagtattttaa 292  Q
    |||| ||||||||    
T  33027246 tttaatattttaa 33027258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 225 - 261
Target Start/End: Complemental strand, 42009726 - 42009690
Alignment:
Q  225 tttttatttttgtcttagcaataattacacaaatttt 261  Q
    |||||||||||||||||| ||||||||||||| ||||    
T  42009726 tttttatttttgtcttagtaataattacacaactttt 42009690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 166 - 285
Target Start/End: Complemental strand, 2223788 - 2223669
Alignment:
Q  166 tgccttaagggtaatggttaaaaaatttattagtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaattttagtt 265  Q
    ||||||||| |||||| ||||  ||| |||||||| ||||| ||||||  |||| ||| |||||| || |||||||  |||||||||| || |||| |||    
T  2223788 tgccttaagagtaatgattaaggaatctattagtaaaaattctgttttaaaaatacaaatttttacttctgtcttaataataattacataattttttgtt 2223689  T
Q  266 acaaagttacttattttagt 285  Q
     ||| |||||||||||||||    
T  2223688 gcaatgttacttattttagt 2223669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 194 - 304
Target Start/End: Original strand, 23131454 - 23131564
Alignment:
Q  194 attagtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaattttagttacaaagttacttattttagtattttaac 293  Q
    ||||||||||| | ||| ||| ||||  || |||||| |||||| |||||||||||||| ||| ||||  || |||| ||||||||||||||| ||||||    
T  23131454 attagtagaaactttgtcttgaaaatataaatttttacttttgttttagcaataattacgcaactttttattgcaaaattacttattttagtactttaac 23131553  T
Q  294 cgatacctcaa 304  Q
    | ||| |||||    
T  23131554 caataactcaa 23131564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 212 - 294
Target Start/End: Complemental strand, 29694388 - 29694306
Alignment:
Q  212 ttggaaatgcaagtttttatttttgtcttagcaataattacacaaattttagttacaaagttacttattttagtattttaacc 294  Q
    |||||||| ||||||||||||||||||||| |||||||||||  | ||||   | |||| ||||||||||||||| |||||||    
T  29694388 ttggaaatacaagtttttatttttgtcttaacaataattacatcacttttcaatgcaaacttacttattttagtactttaacc 29694306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 216 - 293
Target Start/End: Original strand, 246547 - 246624
Alignment:
Q  216 aaatgcaagtttttatttttgtcttagcaataattacacaaattttagttacaaagttacttattttagtattttaac 293  Q
    |||| |||||||||| |||| ||| |||||||||||||| | |||| | | |||| ||||||||||||||| ||||||    
T  246547 aaatacaagtttttacttttttctgagcaataattacaccacttttcgatgcaaacttacttattttagtactttaac 246624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University