View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14679_low_7 (Length: 368)
Name: NF14679_low_7
Description: NF14679
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14679_low_7 |
 | |
|
| [»] scaffold0002 (2 HSPs) |
| | |
|
| [»] scaffold0351 (1 HSPs) |
| | |
|
| [»] scaffold0263 (1 HSPs) |
| | |
|
| [»] scaffold0063 (2 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 8 - 354
Target Start/End: Complemental strand, 6279005 - 6278660
Alignment:
| Q |
8 |
ttttaaagggtagaaaaattattgcatctgtctgatcaaaccaatatcttatcctaagttataaatttcaataataatataacaatatctttatcactat |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
6279005 |
ttttaaagggtagaaaaattattgcatctgtctgatcaaacctatatcttatcctaagttataaatttcaataataatataacaatatctttattactat |
6278906 |
T |
|
| Q |
108 |
tgtgtacggccaaataaacagatataagctcatgtctttgttaagatgatggcggagtacaaaagagtagacttctatgggtcttcgtcttcccttacac |
207 |
Q |
| |
|
|||||||||||||||||||||||||| || |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6278905 |
tgtgtacggccaaataaacagatataggcgcatgtctttgttaagatgatggaagagtacaaaagagtagacttctatgggtcttcgtcttcccttacac |
6278806 |
T |
|
| Q |
208 |
gtattgcatttaagctagtagctaccatgtcataagttttaaattgtaataaatacactctccaatattatgtatgcaaaatactccttcaaaacaacaa |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6278805 |
gtattgcatttaagctagtagctaccatgtcataagttttaaattgtaataaatacactctccaatattatgtatgcaaaatactccttcaaaacaacaa |
6278706 |
T |
|
| Q |
308 |
acatttcgtgttgatagtgacaatactctttacacacatgaggtttg |
354 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
6278705 |
acatttcgtg-tgatagtgacaatactctttacacacatgaggtttg |
6278660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 127; Significance: 2e-65; HSPs: 2)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 80 - 315
Target Start/End: Original strand, 453111 - 453340
Alignment:
| Q |
80 |
aataatataacaatatctttatcactattgtgtacggccaaataaacagatataagctcatgtctttgttaagatgatggcggagtacaaaagagtagac |
179 |
Q |
| |
|
||||||| || ||||||||||| ||||||||||| ||||||||||||||||||||| |||| ||||||||||||||||| ||||| |||| |
|
|
| T |
453111 |
aataataaaataatatctttattactattgtgtatggccaaataaacagatataagtgcatgcctttgttaagatgatggaggagt----------agac |
453200 |
T |
|
| Q |
180 |
ttctatgggtcttcgtcttcccttacacgtattgcatttaagctagtagctaccatgtcataag-ttttaaattg---taataaatacactctccaatat |
275 |
Q |
| |
|
||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| |||||| | |
|
|
| T |
453201 |
ttctatgagtcttcgtcttcccccacacgtattgcatttaagctagtagctaccatgtcataagtttttaaattgtactaataaatacactgtccaatct |
453300 |
T |
|
| Q |
276 |
tatgtatgcaaaatactccttcaaaacaacaaacatttcg |
315 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
453301 |
tatgtatgcaaaatgctccttcaaaacaacaaacatttcg |
453340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 13 - 243
Target Start/End: Complemental strand, 111018 - 110795
Alignment:
| Q |
13 |
aagggtagaaaaattattgcatctgtctgatcaaaccaatatcttatcctaagttataaatttcaataataatataacaatatctttatcactattgtgt |
112 |
Q |
| |
|
||||||||||||||| ||||||||| ||| |||| |||||||||||| ||| |||||| |||||||||| || ||||||||||| |||||||||| |
|
|
| T |
111018 |
aagggtagaaaaattgttgcatctg----atccaacc--tatcttatcctatgttttaaattgtaataataataaaataatatctttattactattgtgt |
110925 |
T |
|
| Q |
113 |
acggccaaataaacagatataagctcatgtctttgttaagatgatggcggagtacaaaagagtagacttctatgggtcttcgtcttcccttacacgtatt |
212 |
Q |
| |
|
|||||||||||||||||||||| | |||| ||||||||||||||||| ||||||||||||||||||||||| | ||||||||||||||| |||| |||| |
|
|
| T |
110924 |
acggccaaataaacagatataatcgcatgcctttgttaagatgatggaggagtacaaaagagtagacttcttttggtcttcgtcttccc-cacacatatt |
110826 |
T |
|
| Q |
213 |
gcatttaagctagtagctaccatgtcataag |
243 |
Q |
| |
|
|||||||||||||||| ||||| |||||||| |
|
|
| T |
110825 |
gcatttaagctagtagttaccacgtcataag |
110795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0351 (Bit Score: 101; Significance: 5e-50; HSPs: 1)
Name: scaffold0351
Description:
Target: scaffold0351; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 52 - 243
Target Start/End: Original strand, 10605 - 10793
Alignment:
| Q |
52 |
tatcttatcctaagttataaatttcaataataatataacaatatctttatcactattgtgtacggccaaataaacagatataagctcatgtctttgttaa |
151 |
Q |
| |
|
|||||||||||| ||| |||||| |||||||||| || ||||||||||| | |||||||||||||||||||||||||||||| | |||| ||||||||| |
|
|
| T |
10605 |
tatcttatcctatgttttaaattgtaataataataaaataatatctttattaatattgtgtacggccaaataaacagatataatcgcatgcctttgttaa |
10704 |
T |
|
| Q |
152 |
gatgatggcggagtacaaaagagtagacttctatgggtcttcgtcttcccttacacgtattgcatttaagctagtagctaccatgtcataag |
243 |
Q |
| |
|
|||||||| |||||||||||||||||||| | | ||||||||||||||| |||| |||||||||||||||||||| ||||| |||||||| |
|
|
| T |
10705 |
gatgatggaggagtacaaaagagtagact--ttttggtcttcgtcttccc-gacacatattgcatttaagctagtagttaccacgtcataag |
10793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0263 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: scaffold0263
Description:
Target: scaffold0263; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 124 - 243
Target Start/End: Complemental strand, 21472 - 21354
Alignment:
| Q |
124 |
aacagatataagctcatgtctttgttaagatgatggcggagtacaaaagagtagacttctatgggtcttcgtcttcccttacacgtattgcatttaagct |
223 |
Q |
| |
|
|||||||||||| || | ||||||||||||||||| ||| ||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||| |
|
|
| T |
21472 |
aacagatataagtgcaggcctttgttaagatgatggaggaatacaaaagagtagacttctattggtcttcgtcttccc-cacacgtattgcatttaagct |
21374 |
T |
|
| Q |
224 |
agtagctaccatgtcataag |
243 |
Q |
| |
|
|| |||||||| |||||||| |
|
|
| T |
21373 |
agcagctaccacgtcataag |
21354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0063 (Bit Score: 66; Significance: 4e-29; HSPs: 2)
Name: scaffold0063
Description:
Target: scaffold0063; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 122 - 243
Target Start/End: Complemental strand, 35760 - 35640
Alignment:
| Q |
122 |
taaacagatataagctcatgtctttgttaagatgatggcggagtacaaaagagtagacttctatgggtcttcgtcttcccttacacgtattgcatttaag |
221 |
Q |
| |
|
|||| |||||||||| |||| ||||||| |||| ||| ||||||||||||||||||||||||| ||||||||||||||| ||| |||||||||||||| |
|
|
| T |
35760 |
taaagagatataagcgcatgcctttgttttgatgttggaggagtacaaaagagtagacttctattggtcttcgtcttccc-cacatgtattgcatttaag |
35662 |
T |
|
| Q |
222 |
ctagtagctaccatgtcataag |
243 |
Q |
| |
|
||||||||||||| ||||||| |
|
|
| T |
35661 |
ctagtagctaccacttcataag |
35640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0063; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 12 - 130
Target Start/End: Complemental strand, 36023 - 35911
Alignment:
| Q |
12 |
aaagggtagaaaaattattgcatctgtctgatcaaaccaatatcttatcctaagttataaatttcaataataatataacaatatctttatcactattgtg |
111 |
Q |
| |
|
|||||||||||||||||||||||||| ||| |||| |||||||||||| ||| |||||| |||||||||| || ||||||||||| ||||||| | |
|
|
| T |
36023 |
aaagggtagaaaaattattgcatctg----atccaacc--tatcttatcctatgttttaaattgtaataataataaaataatatctttattactattgag |
35930 |
T |
|
| Q |
112 |
tacggccaaataaacagat |
130 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
35929 |
tacggccaaataaacagat |
35911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University