View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14679_low_8 (Length: 367)

Name: NF14679_low_8
Description: NF14679
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14679_low_8
NF14679_low_8
[»] chr7 (7 HSPs)
chr7 (232-351)||(39020492-39020611)
chr7 (232-351)||(1778286-1778405)
chr7 (233-351)||(3302134-3302251)
chr7 (241-323)||(11698669-11698750)
chr7 (108-156)||(39020687-39020735)
chr7 (115-156)||(1778159-1778200)
chr7 (115-156)||(3302007-3302048)
[»] chr6 (6 HSPs)
chr6 (234-351)||(21881124-21881241)
chr6 (234-335)||(34213705-34213806)
chr6 (234-338)||(20740310-20740414)
chr6 (245-326)||(22577492-22577574)
chr6 (115-156)||(3524057-3524098)
chr6 (115-156)||(21880996-21881037)
[»] chr3 (4 HSPs)
chr3 (238-351)||(43275652-43275765)
chr3 (232-351)||(18270010-18270127)
chr3 (233-312)||(893308-893386)
chr3 (115-156)||(43275529-43275570)
[»] chr5 (16 HSPs)
chr5 (234-351)||(7767325-7767442)
chr5 (232-351)||(27170408-27170527)
chr5 (239-324)||(18696719-18696804)
chr5 (232-348)||(26656436-26656550)
chr5 (232-348)||(26928023-26928137)
chr5 (232-351)||(7271515-7271631)
chr5 (232-351)||(6030626-6030741)
chr5 (236-338)||(1157532-1157634)
chr5 (232-338)||(41355816-41355922)
chr5 (114-156)||(21600763-21600805)
chr5 (241-338)||(38958483-38958574)
chr5 (114-156)||(1157723-1157765)
chr5 (114-156)||(6989403-6989445)
chr5 (115-156)||(7767530-7767571)
chr5 (115-156)||(27170613-27170654)
chr5 (241-277)||(6989540-6989576)
[»] chr1 (5 HSPs)
chr1 (234-351)||(34654645-34654763)
chr1 (232-351)||(615447-615564)
chr1 (234-338)||(34117753-34117857)
chr1 (245-351)||(39709308-39709414)
chr1 (115-156)||(39709502-39709543)
[»] chr4 (11 HSPs)
chr4 (232-351)||(23054568-23054688)
chr4 (232-338)||(47518762-47518868)
chr4 (241-338)||(53201968-53202065)
chr4 (241-338)||(34227304-34227401)
chr4 (241-340)||(24957897-24957997)
chr4 (234-304)||(6409723-6409794)
chr4 (238-304)||(19658059-19658126)
chr4 (114-156)||(34227496-34227538)
chr4 (114-156)||(53201829-53201871)
chr4 (115-156)||(6409594-6409635)
chr4 (238-301)||(54199597-54199661)
[»] chr2 (11 HSPs)
chr2 (233-351)||(4869335-4869451)
chr2 (234-351)||(34659960-34660075)
chr2 (234-335)||(3921301-3921402)
chr2 (241-338)||(1895118-1895215)
chr2 (234-311)||(17375014-17375090)
chr2 (245-338)||(1551897-1551990)
chr2 (236-338)||(17282268-17282370)
chr2 (114-156)||(1552090-1552132)
chr2 (114-156)||(3921171-3921213)
chr2 (114-156)||(17282441-17282483)
chr2 (116-156)||(1894984-1895024)
[»] chr8 (5 HSPs)
chr8 (232-342)||(5994315-5994424)
chr8 (234-347)||(10408533-10408646)
chr8 (232-304)||(20861009-20861081)
chr8 (115-156)||(5994189-5994230)
chr8 (115-156)||(6443596-6443637)
[»] scaffold0009 (1 HSPs)
scaffold0009 (232-312)||(54169-54249)


Alignment Details
Target: chr7 (Bit Score: 108; Significance: 4e-54; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 232 - 351
Target Start/End: Complemental strand, 39020611 - 39020492
Alignment:
Q  232 gtcgggaataaaaccccaaacaccaccattagctctcccaagcaccttcaccctaaacacacctcacaaagaaccgcaaaagtcaaccaaaaacctttgt 331  Q
    |||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  39020611 gtcgggaatacaaccccaaacaccaccattagctctcccaagcaccctcaccctaaacacacctcataaagaaccgcaaaagtcaaccaaaaacctttgt 39020512  T
Q  332 accatcatacagcaaggaaa 351  Q
    ||||||||||||||||||||    
T  39020511 accatcatacagcaaggaaa 39020492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 232 - 351
Target Start/End: Original strand, 1778286 - 1778405
Alignment:
Q  232 gtcgggaataaaaccccaaacaccaccattagctctcccaagcaccttcaccctaaacacacctcacaaagaaccgcaaaagtcaaccaaaaacctttgt 331  Q
    |||||||||||||||||||||| |||||||||| ||||||| |||||||| || | ||||||||| |||||||||||||||| ||| |||||||| ||||    
T  1778286 gtcgggaataaaaccccaaacatcaccattagccctcccaaacaccttcatccaacacacacctcccaaagaaccgcaaaagccaaacaaaaacccttgt 1778385  T
Q  332 accatcatacagcaaggaaa 351  Q
    |||||||||||  |||||||    
T  1778386 accatcatacaataaggaaa 1778405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 233 - 351
Target Start/End: Original strand, 3302134 - 3302251
Alignment:
Q  233 tcgggaataaaaccccaaacaccaccattagctctcccaagcaccttcaccctaaacacacctcacaaagaaccgcaaaagtcaaccaaaaacctttgta 332  Q
    ||||||| |||| | ||||||||||||||||||||||||| ||||||||| | |||||||| ||||| ||||||||| ||| |||||||||||| |||||    
T  3302134 tcgggaacaaaatctcaaacaccaccattagctctcccaaacaccttcacacaaaacacacttcacagagaaccgcagaagccaaccaaaaacc-ttgta 3302232  T
Q  333 ccatcatacagcaaggaaa 351  Q
    |||||||||| ||||||||    
T  3302233 ccatcatacaacaaggaaa 3302251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 241 - 323
Target Start/End: Complemental strand, 11698750 - 11698669
Alignment:
Q  241 aaaaccccaaacaccaccattagctctcccaagcaccttcaccctaaacacacctcacaaagaaccgcaaaagtcaaccaaaa 323  Q
    |||||||||||||| |||||||||||||| |||||||||||||| |||||||||| | ||| || |||||||| |||||||||    
T  11698750 aaaaccccaaacacaaccattagctctcctaagcaccttcaccc-aaacacaccttataaacaatcgcaaaagccaaccaaaa 11698669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 108 - 156
Target Start/End: Complemental strand, 39020735 - 39020687
Alignment:
Q  108 gttgttacaaaatcctcaaacattgtcacaagtgccacaaaaacaactt 156  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||    
T  39020735 gttgttacaaaatcctcaaacattgtcacaactgccacaaaaacaactt 39020687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 115 - 156
Target Start/End: Original strand, 1778159 - 1778200
Alignment:
Q  115 caaaatcctcaaacattgtcacaagtgccacaaaaacaactt 156  Q
    |||||||||||||||||||||||| |||||||||||||||||    
T  1778159 caaaatcctcaaacattgtcacaactgccacaaaaacaactt 1778200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 156
Target Start/End: Original strand, 3302007 - 3302048
Alignment:
Q  115 caaaatcctcaaacattgtcacaagtgccacaaaaacaactt 156  Q
    |||||||||||||||| ||||||| ||||||||||| |||||    
T  3302007 caaaatcctcaaacatggtcacaactgccacaaaaataactt 3302048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 98; Significance: 3e-48; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 234 - 351
Target Start/End: Original strand, 21881124 - 21881241
Alignment:
Q  234 cgggaataaaaccccaaacaccaccattagctctcccaagcaccttcaccctaaacacacctcacaaagaaccgcaaaagtcaaccaaaaacctttgtac 333  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| ||||||    
T  21881124 cgggaataaaacctcaaacaccaccattagctctcccaagcaccttcacccaaaacacacctcacaaagaactgcaaaagtcaaccaaaaacccttgtac 21881223  T
Q  334 catcatacagcaaggaaa 351  Q
    ||||||||| ||||||||    
T  21881224 catcatacaacaaggaaa 21881241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 234 - 335
Target Start/End: Complemental strand, 34213806 - 34213705
Alignment:
Q  234 cgggaataaaaccccaaacaccaccattagctctcccaagcaccttcaccctaaacacacctcacaaagaaccgcaaaagtcaaccaaaaacctttgtac 333  Q
    ||||||||||| |||||||||||||||||||||||||||||||| |  ||| ||||||||||||||||||| |||||||| |||||||||||| ||||||    
T  34213806 cgggaataaaatcccaaacaccaccattagctctcccaagcaccatatcccaaaacacacctcacaaagaatcgcaaaagccaaccaaaaacccttgtac 34213707  T
Q  334 ca 335  Q
    ||    
T  34213706 ca 34213705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 234 - 338
Target Start/End: Original strand, 20740310 - 20740414
Alignment:
Q  234 cgggaataaaaccccaaacaccaccattagctctcccaagcaccttcaccctaaacacacctcacaaagaaccgcaaaagtcaaccaaaaacctttgtac 333  Q
    |||||| |||||| |||||||||||||||||||||| |||||||||||||| ||||||| |||| ||| || |||||||| |||| ||||| | ||||||    
T  20740310 cgggaaaaaaacctcaaacaccaccattagctctcctaagcaccttcacccaaaacacatctcataaacaatcgcaaaagccaactaaaaatccttgtac 20740409  T
Q  334 catca 338  Q
    |||||    
T  20740410 catca 20740414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 245 - 326
Target Start/End: Original strand, 22577492 - 22577574
Alignment:
Q  245 ccccaaacaccaccattagctctcccaagcaccttca-ccctaaacacacctcacaaagaaccgcaaaagtcaaccaaaaacc 326  Q
    ||||||||| |||||||||||||||||| |||||||| ||  ||| ||||||| |||||||| ||||||  | ||||||||||    
T  22577492 ccccaaacaacaccattagctctcccaaacaccttcatccaaaaatacacctcccaaagaacagcaaaaaccgaccaaaaacc 22577574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 156
Target Start/End: Complemental strand, 3524098 - 3524057
Alignment:
Q  115 caaaatcctcaaacattgtcacaagtgccacaaaaacaactt 156  Q
    ||||||||||||||||  |||||| |||||||||||||||||    
T  3524098 caaaatcctcaaacatcatcacaactgccacaaaaacaactt 3524057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 156
Target Start/End: Original strand, 21880996 - 21881037
Alignment:
Q  115 caaaatcctcaaacattgtcacaagtgccacaaaaacaactt 156  Q
    |||||||||||||||| ||||||| ||||||||||| |||||    
T  21880996 caaaatcctcaaacatcgtcacaactgccacaaaaataactt 21881037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 90; Significance: 2e-43; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 238 - 351
Target Start/End: Original strand, 43275652 - 43275765
Alignment:
Q  238 aataaaaccccaaacaccaccattagctctcccaagcaccttcaccctaaacacacctcacaaagaaccgcaaaagtcaaccaaaaacctttgtaccatc 337  Q
    |||||||||| ||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| |||||||||||| ||||||||||    
T  43275652 aataaaaccctaaacaccaccattagctctcccaagcaccttcatccaaaacacacctcacaaagaaccgcaaaaggcaaccaaaaacccttgtaccatc 43275751  T
Q  338 atacagcaaggaaa 351  Q
    ||||| ||||||||    
T  43275752 atacaacaaggaaa 43275765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 232 - 351
Target Start/End: Complemental strand, 18270127 - 18270010
Alignment:
Q  232 gtcgggaataaaaccccaaacaccaccattagctctcccaagcaccttcaccctaaacacacctcacaaagaaccgcaaaagtcaaccaaaaacctttgt 331  Q
    |||| |||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||  | ||||||||||||||||||| | ||||| ||||    
T  18270127 gtcgagaataaaaccccaaacaccacccttagctctcccaagcaccttcacccaaaacacacct--cgaagaaccgcaaaagtcaactacaaacccttgt 18270030  T
Q  332 accatcatacagcaaggaaa 351  Q
    |||||||||||  |||||||    
T  18270029 accatcatacaataaggaaa 18270010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 233 - 312
Target Start/End: Complemental strand, 893386 - 893308
Alignment:
Q  233 tcgggaataaaaccccaaacaccaccattagctctcccaagcaccttcaccctaaacacacctcacaaagaaccgcaaaa 312  Q
    |||||||||||| | ||||||||| ||||| ||||||||||||||||||    |||||||||||||||||||||||||||    
T  893386 tcgggaataaaatcacaaacaccatcattaactctcccaagcaccttca-gtaaaacacacctcacaaagaaccgcaaaa 893308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 115 - 156
Target Start/End: Original strand, 43275529 - 43275570
Alignment:
Q  115 caaaatcctcaaacattgtcacaagtgccacaaaaacaactt 156  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  43275529 caaaatcctcaaacattgtcacaagtgccacaaaaacaactt 43275570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 86; Significance: 5e-41; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 234 - 351
Target Start/End: Complemental strand, 7767442 - 7767325
Alignment:
Q  234 cgggaataaaaccccaaacaccaccattagctctcccaagcaccttcaccctaaacacacctcacaaagaaccgcaaaagtcaaccaaaaacctttgtac 333  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||| || |||||||||||||||||||||| ||||| ||||||| |||||||||||    
T  7767442 cgggaataaaaccccaaagaccaccattagctctcccaagcaccttcatccaaaacacacctcacaaagaaccgtaaaagccaaccaataacctttgtac 7767343  T
Q  334 catcatacagcaaggaaa 351  Q
     |||||||| ||||||||    
T  7767342 gatcatacaacaaggaaa 7767325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 232 - 351
Target Start/End: Complemental strand, 27170527 - 27170408
Alignment:
Q  232 gtcgggaataaaaccccaaacaccaccattagctctcccaagcaccttcaccctaaacacacctcacaaagaaccgcaaaagtcaaccaaaaacctttgt 331  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||  |||||||||||||||||||||||||||| |||||||||| | ||||    
T  27170527 gtcgggaataaaaccccaaacaccaccattagctctcccaagcacctttaccgaaaacacacctcacaaagaaccgcaaaagccaaccaaaaatccttgt 27170428  T
Q  332 accatcatacagcaaggaaa 351  Q
    ||| |||| || ||||||||    
T  27170427 accctcatgcatcaaggaaa 27170408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 239 - 324
Target Start/End: Original strand, 18696719 - 18696804
Alignment:
Q  239 ataaaaccccaaacaccaccattagctctcccaagcaccttcaccctaaacacacctcacaaagaaccgcaaaagtcaaccaaaaa 324  Q
    |||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||    
T  18696719 ataaaaccccaaacaccaccgttagctctcccaagcaccttcacccgaaacacacctcacaaagaaccgcaaaagccaaccaaaaa 18696804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 232 - 348
Target Start/End: Original strand, 26656436 - 26656550
Alignment:
Q  232 gtcgggaataaaaccccaaacaccaccattagctctcccaagcaccttcaccctaaacacacctcacaaagaaccgcaaaagtcaaccaaaaacctttgt 331  Q
    ||||| ||||||||||||||||||||| |||||||||||||||||| |||||| ||||||||||  | ||||||||| |||| |||| ||||||||||||    
T  26656436 gtcggaaataaaaccccaaacaccacccttagctctcccaagcaccgtcacccaaaacacacct--cgaagaaccgccaaagccaactaaaaacctttgt 26656533  T
Q  332 accatcatacagcaagg 348  Q
    ||||||||||| |||||    
T  26656534 accatcatacaacaagg 26656550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 232 - 348
Target Start/End: Original strand, 26928023 - 26928137
Alignment:
Q  232 gtcgggaataaaaccccaaacaccaccattagctctcccaagcaccttcaccctaaacacacctcacaaagaaccgcaaaagtcaaccaaaaacctttgt 331  Q
    ||||| ||||||||||||||||||||| |||||||||||||||||| |||||| ||||||||||  | ||||||||| |||| |||| ||||||||||||    
T  26928023 gtcggaaataaaaccccaaacaccacccttagctctcccaagcaccgtcacccaaaacacacct--cgaagaaccgccaaagccaactaaaaacctttgt 26928120  T
Q  332 accatcatacagcaagg 348  Q
    ||||||||||| |||||    
T  26928121 accatcatacaacaagg 26928137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 232 - 351
Target Start/End: Original strand, 7271515 - 7271631
Alignment:
Q  232 gtcgggaataaaaccccaaacaccaccattagctctcccaagcaccttcaccctaaacacacctcacaaagaaccgcaaaagtcaaccaaaaacctttgt 331  Q
    ||||||||||||||||||||||||||| ||||||||| |||||||||||| || ||||||||  ||| ||| |||||||||| |||||||||||| ||||    
T  7271515 gtcgggaataaaaccccaaacaccacccttagctctctcaagcaccttcatccaaaacacac--cacgaag-accgcaaaagacaaccaaaaacccttgt 7271611  T
Q  332 accatcatacagcaaggaaa 351  Q
    ||||||||||| ||||||||    
T  7271612 accatcatacaacaaggaaa 7271631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 232 - 351
Target Start/End: Complemental strand, 6030741 - 6030626
Alignment:
Q  232 gtcgggaataaaaccccaaacaccaccattagctctcccaagcaccttcaccctaaacacacctcacaaagaaccgcaaaagtcaaccaaaaacctttgt 331  Q
    ||||||||||||||||||| ||||||| ||||||||||||||||||||||||| ||||||||||  | |||||| ||||||| |||||| ||||| ||||    
T  6030741 gtcgggaataaaaccccaa-caccacccttagctctcccaagcaccttcacccaaaacacacct--cgaagaactgcaaaagccaaccacaaacc-ttgt 6030646  T
Q  332 accatcatacagcaaggaaa 351  Q
    ||||||||||| ||||||||    
T  6030645 accatcatacaacaaggaaa 6030626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 236 - 338
Target Start/End: Complemental strand, 1157634 - 1157532
Alignment:
Q  236 ggaataaaaccccaaacaccaccattagctctcccaagcaccttcaccctaaacacacctcacaaagaaccgcaaaagtcaaccaaaaacctttgtacca 335  Q
    |||| ||||||||||||||||||||||||||||| ||||||||||| || |||||||||||| ||| |||||||||| |||||||||||   ||||||||    
T  1157634 ggaaaaaaaccccaaacaccaccattagctctcctaagcaccttcatccaaaacacacctcataaacaaccgcaaaaatcaaccaaaaattgttgtacca 1157535  T
Q  336 tca 338  Q
    |||    
T  1157534 tca 1157532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 232 - 338
Target Start/End: Complemental strand, 41355922 - 41355816
Alignment:
Q  232 gtcgggaataaaaccccaaacaccaccattagctctcccaagcaccttcaccctaaacacacctcacaaagaaccgcaaaagtcaaccaaaaacctttgt 331  Q
    |||||||| ||||||| ||||||||||||||||||||| | |||||||||||| ||||||| |||| ||| ||| ||||| | |||||||||| | ||||    
T  41355922 gtcgggaaaaaaacccaaaacaccaccattagctctcctacgcaccttcacccaaaacacatctcataaataacagcaaacgccaaccaaaaatccttgt 41355823  T
Q  332 accatca 338  Q
    |||||||    
T  41355822 accatca 41355816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 114 - 156
Target Start/End: Original strand, 21600763 - 21600805
Alignment:
Q  114 acaaaatcctcaaacattgtcacaagtgccacaaaaacaactt 156  Q
    ||||||||||||||||| ||||||| |||||||||||||||||    
T  21600763 acaaaatcctcaaacatcgtcacaactgccacaaaaacaactt 21600805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 241 - 338
Target Start/End: Complemental strand, 38958574 - 38958483
Alignment:
Q  241 aaaaccccaaacaccaccattagctctcccaagcaccttcaccctaaacacacctcacaaagaaccgcaaaagtcaaccaaaaacctttgtaccatca 338  Q
    |||| |||||||||||||||||||||||| |||      ||||| ||||||| |||| ||| | ||||||||| |||||||||| | |||||||||||    
T  38958574 aaaatcccaaacaccaccattagctctcctaag------cacccaaaacacatctcataaatatccgcaaaagccaaccaaaaatccttgtaccatca 38958483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 114 - 156
Target Start/End: Complemental strand, 1157765 - 1157723
Alignment:
Q  114 acaaaatcctcaaacattgtcacaagtgccacaaaaacaactt 156  Q
    ||||||||||||| ||| ||||||| |||||||||||||||||    
T  1157765 acaaaatcctcaagcatcgtcacaactgccacaaaaacaactt 1157723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 114 - 156
Target Start/End: Original strand, 6989403 - 6989445
Alignment:
Q  114 acaaaatcctcaaacattgtcacaagtgccacaaaaacaactt 156  Q
    ||||||||||||| ||| ||||||| |||||||||||||||||    
T  6989403 acaaaatcctcaagcatcgtcacaactgccacaaaaacaactt 6989445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 156
Target Start/End: Complemental strand, 7767571 - 7767530
Alignment:
Q  115 caaaatcctcaaacattgtcacaagtgccacaaaaacaactt 156  Q
    |||||||||||||||| ||| ||| |||||||||||||||||    
T  7767571 caaaatcctcaaacatcgtcgcaactgccacaaaaacaactt 7767530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 156
Target Start/End: Complemental strand, 27170654 - 27170613
Alignment:
Q  115 caaaatcctcaaacattgtcacaagtgccacaaaaacaactt 156  Q
    |||||||||||||||| ||||||| ||||||||||| |||||    
T  27170654 caaaatcctcaaacatcgtcacaactgccacaaaaataactt 27170613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 241 - 277
Target Start/End: Original strand, 6989540 - 6989576
Alignment:
Q  241 aaaaccccaaacaccaccattagctctcccaagcacc 277  Q
    |||||||||||||||| |||||||||||| |||||||    
T  6989540 aaaaccccaaacaccatcattagctctcctaagcacc 6989576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 83; Significance: 3e-39; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 234 - 351
Target Start/End: Original strand, 34654645 - 34654763
Alignment:
Q  234 cgggaataaaacccc-aaacaccaccattagctctcccaagcaccttcaccctaaacacacctcacaaagaaccgcaaaagtcaaccaaaaacctttgta 332  Q
    ||||||||||||||| |||||||||||||||||||||||| ||||||||||| || |||||||||||||||||| |||||||||||||||| || |||||    
T  34654645 cgggaataaaacccccaaacaccaccattagctctcccaaacaccttcacccaaagcacacctcacaaagaaccacaaaagtcaaccaaaatcccttgta 34654744  T
Q  333 ccatcatacagcaaggaaa 351  Q
    |||||||||| ||||||||    
T  34654745 ccatcatacaacaaggaaa 34654763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 232 - 351
Target Start/End: Original strand, 615447 - 615564
Alignment:
Q  232 gtcgggaataaaaccccaaacaccaccattagctctcccaagcaccttcaccctaaacacacctcacaaagaaccgcaaaagtcaaccaaaaacctttgt 331  Q
    |||||||||||||||| |||||||||| ||||||||||||| |||||||| || ||||||||||  | ||||||||||||||||||||| ||||| ||||    
T  615447 gtcgggaataaaaccctaaacaccacccttagctctcccaaacaccttcatccaaaacacacct--cgaagaaccgcaaaagtcaaccacaaacccttgt 615544  T
Q  332 accatcatacagcaaggaaa 351  Q
    ||||||||||| ||||||||    
T  615545 accatcatacaacaaggaaa 615564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 234 - 338
Target Start/End: Original strand, 34117753 - 34117857
Alignment:
Q  234 cgggaataaaaccccaaacaccaccattagctctcccaagcaccttcaccctaaacacacctcacaaagaaccgcaaaagtcaaccaaaaacctttgtac 333  Q
    |||| |||||||||||||||||| | |||||||||||||||||||||| || ||||| |||||||||||||||||||||| |||||||||| | ||||||    
T  34117753 cggggataaaaccccaaacaccaacgttagctctcccaagcaccttcatccaaaacatacctcacaaagaaccgcaaaagccaaccaaaaatccttgtac 34117852  T
Q  334 catca 338  Q
    |||||    
T  34117853 catca 34117857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 245 - 351
Target Start/End: Complemental strand, 39709414 - 39709308
Alignment:
Q  245 ccccaaacaccaccattagctctcccaagcaccttcaccctaaacacacctcacaaagaaccgcaaaagtcaaccaaaaacctttgtaccatcatacagc 344  Q
    |||||||||||||||||||||||||||||  ||||  ||| |||||||||||||||||||| ||||||| |||||||||||| ||||||| ||||||| |    
T  39709414 ccccaaacaccaccattagctctcccaagtgccttttcccaaaacacacctcacaaagaactgcaaaagccaaccaaaaacccttgtaccgtcatacatc 39709315  T
Q  345 aaggaaa 351  Q
    |||||||    
T  39709314 aaggaaa 39709308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 156
Target Start/End: Complemental strand, 39709543 - 39709502
Alignment:
Q  115 caaaatcctcaaacattgtcacaagtgccacaaaaacaactt 156  Q
    |||||||||||||||| | ||||| |||||||||||||||||    
T  39709543 caaaatcctcaaacatcgccacaactgccacaaaaacaactt 39709502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 77; Significance: 1e-35; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 232 - 351
Target Start/End: Complemental strand, 23054688 - 23054568
Alignment:
Q  232 gtcgggaataaaacccc-aaacaccaccattagctctcccaagcaccttcaccctaaacacacctcacaaagaaccgcaaaagtcaaccaaaaacctttg 330  Q
    ||||||||||||||||| ||||||||| |||||||||| |||||||||||| || |||||||||||||||||||||||||||| || ||||||| | |||    
T  23054688 gtcgggaataaaacccccaaacaccacaattagctctctcaagcaccttcatccaaaacacacctcacaaagaaccgcaaaagccagccaaaaatccttg 23054589  T
Q  331 taccatcatacagcaaggaaa 351  Q
    |||||||||||| ||||||||    
T  23054588 taccatcatacaacaaggaaa 23054568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 232 - 338
Target Start/End: Complemental strand, 47518868 - 47518762
Alignment:
Q  232 gtcgggaataaaaccccaaacaccaccattagctctcccaagcaccttcaccctaaacacacctcacaaagaaccgcaaaagtcaaccaaaaacctttgt 331  Q
    |||||||| |||||| |||||||||||||||||||||| |||||||||||||| ||||||| |||| ||| ||||||||||| |||||||||| | ||||    
T  47518868 gtcgggaaaaaaacctcaaacaccaccattagctctcctaagcaccttcacccaaaacacatctcataaacaaccgcaaaagccaaccaaaaatccttgt 47518769  T
Q  332 accatca 338  Q
    |||||||    
T  47518768 accatca 47518762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 241 - 338
Target Start/End: Original strand, 53201968 - 53202065
Alignment:
Q  241 aaaaccccaaacaccaccattagctctcccaagcaccttcaccctaaacacacctcacaaagaaccgcaaaagtcaaccaaaaacctttgtaccatca 338  Q
    |||||||||||||||||||| |||||||| ||||||||||| || |||||||||||  ||| |||||||||||  ||||||||| | |||||||||||    
T  53201968 aaaaccccaaacaccaccatgagctctcctaagcaccttcatccaaaacacacctcgtaaacaaccgcaaaagctaaccaaaaatccttgtaccatca 53202065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 241 - 338
Target Start/End: Complemental strand, 34227401 - 34227304
Alignment:
Q  241 aaaaccccaaacaccaccattagctctcccaagcaccttcaccctaaacacacctcacaaagaaccgcaaaagtcaaccaaaaacctttgtaccatca 338  Q
    |||| |||||||||||||||| | ||||| ||||||||||| || |||||||||||| ||| |||| |||||| |||||||||| | |||||||||||    
T  34227401 aaaaacccaaacaccaccattggttctcctaagcaccttcatccaaaacacacctcataaacaaccacaaaagccaaccaaaaatccttgtaccatca 34227304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 241 - 340
Target Start/End: Complemental strand, 24957997 - 24957897
Alignment:
Q  241 aaaaccccaaacaccaccattagctctcccaagcaccttca-ccctaaacacacctcacaaagaaccgcaaaagtcaaccaaaaacctttgtaccatcat 339  Q
    ||||||||||||| |||||||| || |||| |||||||||| ||  |||||||||||  ||||||||| ||||  | |||||||||| || |||||||||    
T  24957997 aaaaccccaaacaacaccattaactttcccgagcaccttcatccaaaaacacacctcttaaagaaccgtaaaaaccgaccaaaaacccttataccatcat 24957898  T
Q  340 a 340  Q
    |    
T  24957897 a 24957897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 234 - 304
Target Start/End: Original strand, 6409723 - 6409794
Alignment:
Q  234 cgggaataaaaccccaaacaccaccattagctctcccaagcaccttca-ccctaaacacacctcacaaagaa 304  Q
    |||||| |||||| |||||| |||||||||||||||| |||||||||| ||  ||||||||||| |||||||    
T  6409723 cgggaagaaaacctcaaacaacaccattagctctcccgagcaccttcatccaaaaacacacctcccaaagaa 6409794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 238 - 304
Target Start/End: Original strand, 19658059 - 19658126
Alignment:
Q  238 aataaaaccccaaacaccaccattagctctcccaagcaccttcaccctaa-acacacctcacaaagaa 304  Q
    |||||||||||||||| || |||| || |||||||||||||||| || || ||||||||| |||||||    
T  19658059 aataaaaccccaaacaacatcatttgcactcccaagcaccttcatccaaacacacacctcccaaagaa 19658126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 114 - 156
Target Start/End: Complemental strand, 34227538 - 34227496
Alignment:
Q  114 acaaaatcctcaaacattgtcacaagtgccacaaaaacaactt 156  Q
    ||||||||||||| ||| ||||||| |||||||||||||||||    
T  34227538 acaaaatcctcaagcatcgtcacaactgccacaaaaacaactt 34227496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 114 - 156
Target Start/End: Original strand, 53201829 - 53201871
Alignment:
Q  114 acaaaatcctcaaacattgtcacaagtgccacaaaaacaactt 156  Q
    ||||||||||||| ||| ||||||| |||||||||||||||||    
T  53201829 acaaaatcctcaagcatcgtcacaactgccacaaaaacaactt 53201871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 156
Target Start/End: Original strand, 6409594 - 6409635
Alignment:
Q  115 caaaatcctcaaacattgtcacaagtgccacaaaaacaactt 156  Q
    ||||||||||||||||  |||||| |||||||||||||||||    
T  6409594 caaaatcctcaaacatcatcacaactgccacaaaaacaactt 6409635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 238 - 301
Target Start/End: Original strand, 54199597 - 54199661
Alignment:
Q  238 aataaaaccccaaacaccaccattagctctcccaagcaccttca-ccctaaacacacctcacaaa 301  Q
    |||||||||||||||| |||||||| ||||||||  |||||||| ||  ||||||||||| ||||    
T  54199597 aataaaaccccaaacatcaccattatctctcccagtcaccttcatccaaaaacacacctcccaaa 54199661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 76; Significance: 5e-35; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 233 - 351
Target Start/End: Original strand, 4869335 - 4869451
Alignment:
Q  233 tcgggaataaaaccccaaacaccaccattagctctcccaagcaccttcaccctaaacacacctcacaaagaaccgcaaaagtcaaccaaaaacctttgta 332  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||  | |||||||||||||| |||| | ||||| |||||    
T  4869335 tcgggaataaaaccccaaacaccaccattagctctcccaaacaccttcacccaaaacacacct--cgaagaaccgcaaaagccaactacaaacccttgta 4869432  T
Q  333 ccatcatacagcaaggaaa 351  Q
    |||||||||| ||||||||    
T  4869433 ccatcatacaacaaggaaa 4869451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 234 - 351
Target Start/End: Original strand, 34659960 - 34660075
Alignment:
Q  234 cgggaataaaaccccaaacaccaccattagctctcccaagcaccttcaccctaaacacacctcacaaagaaccgcaaaagtcaaccaaaaacctttgtac 333  Q
    |||||||||| |||||||||||||| |||||||||||| |||||||||||| ||||||||||  | |||||||||||||| |||| ||||| | ||||||    
T  34659960 cgggaataaacccccaaacaccacccttagctctcccatgcaccttcacccgaaacacacct--cgaagaaccgcaaaagccaacaaaaaatccttgtac 34660057  T
Q  334 catcatacagcaaggaaa 351  Q
    ||||||||| ||||||||    
T  34660058 catcatacaacaaggaaa 34660075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 234 - 335
Target Start/End: Original strand, 3921301 - 3921402
Alignment:
Q  234 cgggaataaaaccccaaacaccaccattagctctcccaagcaccttcaccctaaacacacctcacaaagaaccgcaaaagtcaaccaaaaacctttgtac 333  Q
    |||||| |||||||||||||||||||||||||||||  ||||||||||||  |||||||||||| ||| ||||||||||| |||||||||| | ||||||    
T  3921301 cgggaaaaaaaccccaaacaccaccattagctctcctgagcaccttcaccaaaaacacacctcataaacaaccgcaaaagccaaccaaaaatccttgtac 3921400  T
Q  334 ca 335  Q
    ||    
T  3921401 ca 3921402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 241 - 338
Target Start/End: Original strand, 1895118 - 1895215
Alignment:
Q  241 aaaaccccaaacaccaccattagctctcccaagcaccttcaccctaaacacacctcacaaagaaccgcaaaagtcaaccaaaaacctttgtaccatca 338  Q
    ||||||| ||||||||||||||||||||| ||||||||||| || ||||| |||||| ||| ||||||||||| |||||||||| | |||||||||||    
T  1895118 aaaaccctaaacaccaccattagctctcctaagcaccttcatccaaaacaaacctcataaacaaccgcaaaagccaaccaaaaatccttgtaccatca 1895215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 234 - 311
Target Start/End: Original strand, 17375014 - 17375090
Alignment:
Q  234 cgggaataaaaccccaaacaccaccattagctctcccaagcaccttcaccctaaacacacctcacaaagaaccgcaaa 311  Q
    |||||||||||||||||||||||| ||||||| |||||||||||||||||| |||||||||||||||||||| |||||    
T  17375014 cgggaataaaaccccaaacaccac-attagctatcccaagcaccttcacccaaaacacacctcacaaagaacggcaaa 17375090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 245 - 338
Target Start/End: Complemental strand, 1551990 - 1551897
Alignment:
Q  245 ccccaaacaccaccattagctctcccaagcaccttcaccctaaacacacctcacaaagaaccgcaaaagtcaaccaaaaacctttgtaccatca 338  Q
    ||||||||||||||||||||||||| ||||||||||| || |||||| ||||| ||| || |||||||| |||||||||| | |||||||||||    
T  1551990 ccccaaacaccaccattagctctcctaagcaccttcatccaaaacacgcctcataaacaatcgcaaaagccaaccaaaaatccttgtaccatca 1551897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 236 - 338
Target Start/End: Complemental strand, 17282370 - 17282268
Alignment:
Q  236 ggaataaaaccccaaacaccaccattagctctcccaagcaccttcaccctaaacacacctcacaaagaaccgcaaaagtcaaccaaaaacctttgtacca 335  Q
    |||| |||||| ||||||||||| |||||||||  ||||||||||| || |||||||||||| ||| |||||| |||| |||||||||| | ||||||||    
T  17282370 ggaaaaaaacctcaaacaccaccgttagctctcttaagcaccttcatccaaaacacacctcataaacaaccgcgaaagccaaccaaaaatccttgtacca 17282271  T
Q  336 tca 338  Q
    |||    
T  17282270 tca 17282268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 114 - 156
Target Start/End: Complemental strand, 1552132 - 1552090
Alignment:
Q  114 acaaaatcctcaaacattgtcacaagtgccacaaaaacaactt 156  Q
    ||||||||||||| ||| ||||||| |||||||||||||||||    
T  1552132 acaaaatcctcaagcatcgtcacaactgccacaaaaacaactt 1552090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 114 - 156
Target Start/End: Original strand, 3921171 - 3921213
Alignment:
Q  114 acaaaatcctcaaacattgtcacaagtgccacaaaaacaactt 156  Q
    ||||||||||||| ||| ||||||| |||||||||||||||||    
T  3921171 acaaaatcctcaagcatcgtcacaactgccacaaaaacaactt 3921213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 114 - 156
Target Start/End: Complemental strand, 17282483 - 17282441
Alignment:
Q  114 acaaaatcctcaaacattgtcacaagtgccacaaaaacaactt 156  Q
    ||||||||||||| ||| ||||||| |||||||||||||||||    
T  17282483 acaaaatcctcaagcatcgtcacaactgccacaaaaacaactt 17282441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 116 - 156
Target Start/End: Original strand, 1894984 - 1895024
Alignment:
Q  116 aaaatcctcaaacattgtcacaagtgccacaaaaacaactt 156  Q
    ||||||||||| ||| ||||||| |||||||||||||||||    
T  1894984 aaaatcctcaagcatcgtcacaactgccacaaaaacaactt 1895024  T

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Target: chr8 (Bit Score: 67; Significance: 1e-29; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 232 - 342
Target Start/End: Original strand, 5994315 - 5994424
Alignment:
Q  232 gtcgggaataaaaccccaaacaccaccattagctctcccaagcaccttcaccctaaacacacctcacaaagaaccgcaaaagtcaaccaaaaacctttgt 331  Q
    |||||||||| ||| ||||||||||||||||  ||||||||||||||||| || ||||||||||| |||| ||||||||||| |||||||||||| ||||    
T  5994315 gtcgggaatagaacgccaaacaccaccattaattctcccaagcaccttcatccaaaacacacctctcaaaaaaccgcaaaagccaaccaaaaacc-ttgt 5994413  T
Q  332 accatcataca 342  Q
    |||||||||||    
T  5994414 accatcataca 5994424  T

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Target: chr8; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 234 - 347
Target Start/End: Original strand, 10408533 - 10408646
Alignment:
Q  234 cgggaataaaaccccaaacaccaccattagctctcccaagcaccttcaccctaaacacacctcacaaagaaccgcaaaagtcaaccaaaaacctttgtac 333  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||| | || ||| |||||||||||| | |||||| |||||||||||  ||||||    
T  10408533 cgggaataaagccccaaacaccaccattagctctcccaagcaccttcacgcaaagcactcctcacaaagaatcacaaaagccaaccaaaaactcttgtac 10408632  T
Q  334 catcatacagcaag 347  Q
    ||||| ||| ||||    
T  10408633 catcaaacaacaag 10408646  T

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Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 232 - 304
Target Start/End: Original strand, 20861009 - 20861081
Alignment:
Q  232 gtcgggaataaaaccccaaacaccaccattagctctcccaagcaccttcaccctaaacacacctcacaaagaa 304  Q
    |||| |||||||||| ||||||| | ||||||||||| ||| |||||||| || ||||||| |||||||||||    
T  20861009 gtcgagaataaaaccacaaacactatcattagctctcgcaaacaccttcatccaaaacacatctcacaaagaa 20861081  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 156
Target Start/End: Original strand, 5994189 - 5994230
Alignment:
Q  115 caaaatcctcaaacattgtcacaagtgccacaaaaacaactt 156  Q
    |||||||||||||||| ||||||| | |||||||||||||||    
T  5994189 caaaatcctcaaacatcgtcacaactaccacaaaaacaactt 5994230  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 156
Target Start/End: Original strand, 6443596 - 6443637
Alignment:
Q  115 caaaatcctcaaacattgtcacaagtgccacaaaaacaactt 156  Q
    ||||||||||||||||  |||||| |||||||||||||||||    
T  6443596 caaaatcctcaaacatcatcacaactgccacaaaaacaactt 6443637  T

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Target: scaffold0009 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 232 - 312
Target Start/End: Original strand, 54169 - 54249
Alignment:
Q  232 gtcgggaataaaaccccaaacaccaccattagctctcccaagcaccttca-ccctaaacacacctcacaaagaaccgcaaaa 312  Q
    ||||| |||||||||||||| || |||||||||||||||||||||||||| ||  |||||||| |  |||||||||||||||    
T  54169 gtcggtaataaaaccccaaaaac-accattagctctcccaagcaccttcatccaaaaacacactttccaaagaaccgcaaaa 54249  T

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