View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1467_high_2 (Length: 408)
Name: NF1467_high_2
Description: NF1467
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1467_high_2 |
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Alignment Details
Target: chr6 (Bit Score: 383; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 1 - 391
Target Start/End: Original strand, 34683092 - 34683482
Alignment:
| Q |
1 |
atggggattttagaaacttgaagttgtcagaagaacaaatgcaaaatatcgcaaccatttgagtctttatgaggctttgatgacaatgacagtgtcgaag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34683092 |
atggggattttagaaacttgaagttgtcagaagaacaaatgcaaaatatcgcaaccatttgagtctttatgaggctttgatgacaatgacagtgtcgaag |
34683191 |
T |
|
| Q |
101 |
gcagtgtcatccaccgtaaatggaaagttcttgggcgaacaaaaaacgcccacaaatatggtagcattcagtttgctcaatgttcaacattaaagcttcg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34683192 |
gcagtgtcatccaccgtaaatggaaagttcttgggcgaaccaaaaacgcccacaaatatggtagcattcagtttgctcaatgttcaacattaaagcttcg |
34683291 |
T |
|
| Q |
201 |
tagagtgagggtgaaagttcactaaagatatgttaagtctttgaatttcaatagtaaattgtaaatcaattcaatctttaaacgttgatcgtttttggtc |
300 |
Q |
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| T |
34683292 |
tagagtgagggtgaaagttcactaaagatatgttaagtctttgaatttcaatagtaaattgtaaatcaattcaatctttaaaagttgatcgtttttggtc |
34683391 |
T |
|
| Q |
301 |
cacgatgcttacaaatacaaatttaagtattgagtgtcttcgcaaatactattcctcgccgtcaaagaagaaggttgccgaggaaggtcct |
391 |
Q |
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| T |
34683392 |
cacgatgcttacaaatacaaatttaagtattgagtgtcttcgcaaatactattcctcgccgtcaaagaagaaggttgccgaggaaggtcct |
34683482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 141; Significance: 8e-74; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 1 - 172
Target Start/End: Original strand, 26980709 - 26980882
Alignment:
| Q |
1 |
atggggattttagaaacttgaagttgtcagaagaacaaatgcaaaatatcgcaaccatttgagtctttatgaggctttgatgac---aatgacagtgtcg |
97 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||| ||||||||||||| |
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| T |
26980709 |
atggggattttagaaacttgaagttgtcagaagaacaaatgcaaaatatcacaaccatttgagtctt-atgaggctttgatgacgacaatgacagtgtcg |
26980807 |
T |
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| Q |
98 |
aaggcagtgtcatccaccgtaaatggaaagttcttgggcgaacaaaaaacgcccacaaatatggtagcattcagt |
172 |
Q |
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| T |
26980808 |
aaggcagtgtcatccaccgtaaatggaaagttattgggcgaaccaaaaacgcccacaaatatggtagcattcagt |
26980882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 8 - 290
Target Start/End: Complemental strand, 27084221 - 27083941
Alignment:
| Q |
8 |
ttttagaaacttgaagttgtcagaagaacaaatgcaaaatatcgcaaccatttgagtctttatgaggctttgatgacaatgacagtgtcgaaggcagtgt |
107 |
Q |
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|||||||||| ||||| ||| |||||| ||||| ||||| ||||||||||| |||| |||||| || |||||||||||||| ||| | |||||| |||| |
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| T |
27084221 |
ttttagaaaccagaagtcgtccgaagaagaaatggaaaatgtcgcaaccattcgagt-tttatgcggttttgatgacaatgatagtatagaaggcggtgt |
27084123 |
T |
|
| Q |
108 |
catccaccgtaaatggaaagttcttgggcgaacaaaaaacgcccacaaatatggtagcattcagtttgctcaatgttcaacattaaagcttcgtagagtg |
207 |
Q |
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||| |||||||||||||| |||||||||||| || ||||||||| |||||| |||| |||||| ||||||||||||||||||||||| |||||| |
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| T |
27084122 |
catgaaccgtaaatggaaacctcttgggcgaaccaacggcgcccacaattatggtctcattaagtttgttcaatgttcaacattaaagcttcctagagta |
27084023 |
T |
|
| Q |
208 |
agggtgaaagttcactaaagatatgttaagtctttgaatttcaatagtaaattgtaaatcaattcaatctttaaacgttgatc |
290 |
Q |
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||||||||| ||| ||| |||| ||||||||||||||||| | ||||||||||||| ||||||||||||||||| |||||| |
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| T |
27084022 |
agggtgaaa-atcaataatgataagttaagtctttgaatttgagcagtaaattgtaaaacaattcaatctttaaacattgatc |
27083941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 167 - 296
Target Start/End: Original strand, 27022203 - 27022332
Alignment:
| Q |
167 |
ttcagtttgctcaatgttcaacattaaagcttcgtagagtgagggtgaaagttcactaaagatatgttaagtctttgaatttcaatagtaaattgtaaat |
266 |
Q |
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||||||||| ||||||||||||||||||||||| |||||||||||| |||||| || ||||||||||||||||||||||||||| |||||||| |||| |
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| T |
27022203 |
ttcagtttgttcaatgttcaacattaaagcttcctagagtgagggtcaaagttaacgaaagatatgttaagtctttgaatttcagccgtaaattggaaat |
27022302 |
T |
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| Q |
267 |
caattcaatctttaaacgttgatcgttttt |
296 |
Q |
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| || |||||||||||| ||||||| |||| |
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| T |
27022303 |
cgatccaatctttaaacattgatcgctttt |
27022332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 303 - 391
Target Start/End: Original strand, 26981067 - 26981155
Alignment:
| Q |
303 |
cgatgcttacaaatacaaatttaagtattgagtgtcttcgcaaatactattcctcgccgtcaaagaagaaggttgccgaggaaggtcct |
391 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||| ||||||| ||||||||| |
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| T |
26981067 |
cgatgcttacaaatacaaatttaagtattgagtgtgttcgcaaatactattccttgccgtcaaagaagaagattgccgacgaaggtcct |
26981155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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