View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1467_low_1 (Length: 503)
Name: NF1467_low_1
Description: NF1467
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1467_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 439; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 5 - 486
Target Start/End: Complemental strand, 49866631 - 49866150
Alignment:
| Q |
5 |
gatggacatcatcaatatgtcatatttgccatttaacttcacctcctattctcaacatgtcatatttgcttactgcatctagtgaacctataatttgctg |
104 |
Q |
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| T |
49866631 |
gatggacatcatcaatatgtcatatttgccatttaacttcacctcctattctcaacata-catatttgcttactgcatctagtgaacctataatttgctg |
49866533 |
T |
|
| Q |
105 |
aacctataatatctcacagcaaccaataatggatttgcttaagctttggtacattg-ctcaagtcatttttgaaaatagtattttctcgtactggtttga |
203 |
Q |
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| T |
49866532 |
aacctataatatctcgcagcaaccaataatggatttgcttaagctttggtacattggctcaagtcatttttgaaaatagtattttctcgtactggtttga |
49866433 |
T |
|
| Q |
204 |
acagttacttattttaggctttctttgagagttttagaatatatgttctattattttaatagaatgtatttgacttgcagtttttgaggatttggtcaag |
303 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49866432 |
acagttacttattttaggctttctttgagagttttagaatatatgttctattattttaatagaatgtatttgacttgcagtttttgaggatttggtcaag |
49866333 |
T |
|
| Q |
304 |
acagtaacatataaagtcagtttatggatatgttttgtatcttacttcatcttttcaaaatgttccctgctgaaatttggaagttttcaagatcttaata |
403 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
49866332 |
acactaacatataaagtcagtttatggatatgttttgtatcttacttcatcttttcaaaatgttccctgctgaaatttggaagttttcaagatctttata |
49866233 |
T |
|
| Q |
404 |
tgatgtttgtctttccaaaacacatcgccgatgcttagttaaagttgaattcactcgtgtgtgttgtggtaagtagtattctt |
486 |
Q |
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||||||||| |||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49866232 |
tgatgtttggctttccgaaacacatcgccgatgcttggttaaagttgaattcactcgtgtgtgttgtggtaagtagtattctt |
49866150 |
T |
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