View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1467_low_3 (Length: 400)

Name: NF1467_low_3
Description: NF1467
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1467_low_3
NF1467_low_3
[»] chr1 (2 HSPs)
chr1 (1-209)||(47052035-47052243)
chr1 (1-209)||(19657973-19658201)
[»] chr8 (2 HSPs)
chr8 (1-209)||(4707987-4708195)
chr8 (24-93)||(15998265-15998335)
[»] chr2 (5 HSPs)
chr2 (1-202)||(810181-810382)
chr2 (1-209)||(27560634-27560863)
chr2 (1-209)||(37457075-37457304)
chr2 (343-386)||(45114667-45114710)
chr2 (222-289)||(27560543-27560612)
[»] chr5 (1 HSPs)
chr5 (1-209)||(42783975-42784182)
[»] chr3 (4 HSPs)
chr3 (1-209)||(5735784-5735992)
chr3 (1-209)||(5772896-5773104)
chr3 (222-287)||(5736013-5736081)
chr3 (222-287)||(5773125-5773193)
[»] chr4 (2 HSPs)
chr4 (1-209)||(5743037-5743266)
chr4 (343-386)||(11148037-11148080)
[»] chr7 (3 HSPs)
chr7 (343-386)||(23256475-23256518)
chr7 (343-386)||(32390221-32390264)
chr7 (343-386)||(32390688-32390731)


Alignment Details
Target: chr1 (Bit Score: 201; Significance: 1e-109; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 47052035 - 47052243
Alignment:
Q  1 aatatgggtattctccttctacttcaaagcacaaaccctaacccccaaaattctaccaatagagcttgaatatgaagttgctttacttagatgatcaatt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47052035 aatatgggtattctccttctacttcaaagcacaaaccctaacccccaaaattctaccaatagagcttgaatatgaagttgctttacttagatgatcaatt 47052134  T
Q  101 attcttaaggatgattgatttgggaaaggaaggattaagaaatggaagaagaggaatgagggacagagagctaacgggagtgagaggagaatggaaaggg 200  Q
    ||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47052135 attcttaaggatgattgatttgggaaaggaaggaaaaagaaatggaagaagaggaatgagggacagagagctaacgggagtgagaggagaatggaaaggg 47052234  T
Q  201 aaagttatg 209  Q
    |||||||||    
T  47052235 aaagttatg 47052243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 19657973 - 19658201
Alignment:
Q  1 aatatgggtattctccttctacttcaaagcacaaaccctaacccccaaaattctaccaatagagcttgaatatgaagttgctttacttagatgatcaatt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19657973 aatatgggtattctccttctacttcaaagcacaaaccctaacccccaaatttctaccaatagagcttgaatatgaagttgctttacttagatgatcaatt 19658072  T
Q  101 attcttaaggatga---------------------ttgatttgggaaaggaaggattaagaaatggaagaagaggaatgagggacagagagctaacggga 179  Q
    ||||||||||||||                     ||||||||||||||||||||  ||||||||||||||||||| |||||||||||||||||||||||    
T  19658073 attcttaaggatgattgatttggtgatgaaattggttgatttgggaaaggaaggaaaaagaaatggaagaagaggattgagggacagagagctaacggga 19658172  T
Q  180 gtgagaggagaatggaaagggaaagttatg 209  Q
    |||||||||||| ||||| |||||||||||    
T  19658173 gtgagaggagaaaggaaa-ggaaagttatg 19658201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 4707987 - 4708195
Alignment:
Q  1 aatatgggtattctccttctacttcaaagcacaaaccctaacccccaaaattctaccaatagagcttgaatatgaagttgctttacttagatgatcaatt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||    
T  4707987 aatatgggtattctccttctacttcaaagcacaaaccctaacccccaaaattctaccgatagagcttgaatatgaagttgctttacttagatgaccaatt 4708086  T
Q  101 attcttaaggatgattgatttgggaaaggaaggattaagaaatggaagaagaggaatgagggacagagagctaacgggagtgagaggagaatggaaaggg 200  Q
    ||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  4708087 attcttaaggatgattgatttgggaaaggaaggaaaaagaaatggaagaagaggaatgagggacagagagctaacggaagtgagaggagaatggaaaggg 4708186  T
Q  201 aaagttatg 209  Q
    |||||||||    
T  4708187 aaagttatg 4708195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 24 - 93
Target Start/End: Complemental strand, 15998335 - 15998265
Alignment:
Q  24 tcaaagcacaaaccctaacccccaaaattctaccaatagagcttg-aatatgaagttgctttacttagatg 93  Q
    |||||||||| ||||||||||||||||||||||||  |||||||| |||||||| | |||||  |||||||    
T  15998335 tcaaagcacacaccctaacccccaaaattctaccatgagagcttgcaatatgaaatagctttgattagatg 15998265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 186; Significance: 1e-100; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 810181 - 810382
Alignment:
Q  1 aatatgggtattctccttctacttcaaagcacaaaccctaacccccaaaattctaccaatagagcttgaatatgaagttgctttacttagatgatcaatt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  810181 aatatgggtattctccttctacttcaaagcacaaaccctaacccccaaaattctaccaatagagcttgaatatgaagttgctttacttagatgaccaatt 810280  T
Q  101 attcttaaggatgattgatttgggaaaggaaggattaagaaatggaagaagaggaatgagggacagagagctaacgggagtgagaggagaatggaaaggg 200  Q
    ||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  810281 attcttaaggatgattgatttgggaaaggaaggaaaaagaaatggaagaagaggaatgagggacagagagctaacggaagtgagaggagaatggaaaggg 810380  T
Q  201 aa 202  Q
    ||    
T  810381 aa 810382  T

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Target: chr2; HSP #2
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 27560863 - 27560634
Alignment:
Q  1 aatatgggtattctccttctacttcaaagcacaaaccctaacccccaaaattctaccaatagagcttgaatatgaagttgctttacttagatgatcaatt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||    
T  27560863 aatatgggtattctccttctacttcaaagcacaaaccctaacccccaaatttataccaatagagcttgaatatgaagttgctttacttagatgatcaatt 27560764  T
Q  101 attcttaaggatgattgat---------------------ttgggaaaggaaggattaagaaatggaagaagaggaatgagggacagagagctaacggga 179  Q
    |||||||||||||||||||                     |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||    
T  27560763 attcttaaggatgattgatttggtgatgaaattggttgatttgggaaaggaaggaaaaagaaatggaagaagaggaatgagggacagagagctaacggga 27560664  T
Q  180 gtgagaggagaatggaaagggaaagttatg 209  Q
    |||| ||||||| |||||||||||||||||    
T  27560663 gtgataggagaaaggaaagggaaagttatg 27560634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 37457304 - 37457075
Alignment:
Q  1 aatatgggtattctccttctacttcaaagcacaaaccctaacccccaaaattctaccaatagagcttgaatatgaagttgctttacttagatgatcaatt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||    
T  37457304 aatatgggtattctccttctacttcaaagcacaaaccctaacccccaaatttataccaatagagcttgaatatgaagttgctttacttagatgatcaatt 37457205  T
Q  101 attcttaaggatgattgat---------------------ttgggaaaggaaggattaagaaatggaagaagaggaatgagggacagagagctaacggga 179  Q
    |||||||||||||||||||                     |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||    
T  37457204 attcttaaggatgattgatttggtgataaaattggttgatttgggaaaggaaggaaaaagaaatggaagaagaggaatgagggacagagagctaacggga 37457105  T
Q  180 gtgagaggagaatggaaagggaaagttatg 209  Q
    |||| ||||||| |||||||||||||||||    
T  37457104 gtgataggagaaaggaaagggaaagttatg 37457075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 343 - 386
Target Start/End: Original strand, 45114667 - 45114710
Alignment:
Q  343 ttgttgatagggtgttgtttcttaaaacaatttctgtatttttt 386  Q
    ||||||||||| |||||||||||||||||| ||||| |||||||    
T  45114667 ttgttgataggttgttgtttcttaaaacaaattctgcatttttt 45114710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 222 - 289
Target Start/End: Complemental strand, 27560612 - 27560543
Alignment:
Q  222 cccacgtgagtgtctagtaagttctacaatct--attattattaatacttctcatacttgattactttct 289  Q
    |||||||| |||||||||||||||||  || |  ||||| ||||||| ||||||||||| ||||||||||    
T  27560612 cccacgtgtgtgtctagtaagttctagtatatccattatcattaataattctcatacttaattactttct 27560543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 42784182 - 42783975
Alignment:
Q  1 aatatgggtattctccttctacttcaaagcacaaaccctaacccccaaaattctaccaatagagcttgaatatgaagttgctttacttagatgatcaatt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  42784182 aatatgggtattctccttctacttcaaagcacaaaccctaacccccaaaattctaccaatagagcttgaatatgaagttgctttacttagatgaccaatt 42784083  T
Q  101 attcttaaggatgattgatttgggaaaggaaggattaagaaatggaagaagaggaatgagggacagagagctaacgggagtgagaggagaatggaaaggg 200  Q
    ||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||    
T  42784082 attcttaaggatgattgatttgggaaaggaaggaaaaagaaatggaagaagaggaatgagggacagagagctaacggaagtga-aggagaatggaaaggg 42783984  T
Q  201 aaagttatg 209  Q
    |||||||||    
T  42783983 aaagttatg 42783975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 173; Significance: 6e-93; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 5735784 - 5735992
Alignment:
Q  1 aatatgggtattctccttctacttcaaagcacaaaccctaacccccaaaattctaccaatagagcttgaatatgaagttgctttacttagatgatcaatt 100  Q
    |||||||||||||||||  |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5735784 aatatgggtattctcctattacttcaaagcacaaaccctaacccccaaatttctaccaatagagcttgaatatgaagttgctttacttagatgatcaatt 5735883  T
Q  101 attcttaaggatgattgatttgggaaaggaaggattaagaaatggaagaagaggaatgagggacagagagctaacgggagtgagaggagaatggaaaggg 200  Q
    ||||||||||||| ||||||||||||||||||||  ||||||| |||||||||||||||||||||||||| |||||||||||||||||||| ||||||||    
T  5735884 attcttaaggatggttgatttgggaaaggaaggaaaaagaaatagaagaagaggaatgagggacagagagataacgggagtgagaggagaaaggaaaggg 5735983  T
Q  201 aaagttatg 209  Q
    |||||||||    
T  5735984 aaagttatg 5735992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 5772896 - 5773104
Alignment:
Q  1 aatatgggtattctccttctacttcaaagcacaaaccctaacccccaaaattctaccaatagagcttgaatatgaagttgctttacttagatgatcaatt 100  Q
    |||||||||||||||||  |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5772896 aatatgggtattctcctattacttcaaagcacaaaccctaacccccaaatttctaccaatagagcttgaatatgaagttgctttacttagatgatcaatt 5772995  T
Q  101 attcttaaggatgattgatttgggaaaggaaggattaagaaatggaagaagaggaatgagggacagagagctaacgggagtgagaggagaatggaaaggg 200  Q
    ||||||||||||| ||||||||||||||||||||  ||||||| |||||||||||||||||||||||||| |||||||||||||||||||| ||||||||    
T  5772996 attcttaaggatggttgatttgggaaaggaaggaaaaagaaatagaagaagaggaatgagggacagagagataacgggagtgagaggagaaaggaaaggg 5773095  T
Q  201 aaagttatg 209  Q
    |||||||||    
T  5773096 aaagttatg 5773104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 222 - 287
Target Start/End: Original strand, 5736013 - 5736081
Alignment:
Q  222 cccacgtgagtgtctagtaagttctaca---atctattattattaatacttctcatacttgattacttt 287  Q
    |||||||| |||||||||||||||||||   ||| ||||| ||||||| ||||||||||| ||||||||    
T  5736013 cccacgtgtgtgtctagtaagttctacatatatccattatcattaataattctcatacttaattacttt 5736081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 222 - 287
Target Start/End: Original strand, 5773125 - 5773193
Alignment:
Q  222 cccacgtgagtgtctagtaagttctaca---atctattattattaatacttctcatacttgattacttt 287  Q
    |||||||| |||||||||||||||||||   ||| ||||| ||||||| ||||||||||| ||||||||    
T  5773125 cccacgtgtgtgtctagtaagttctacatatatccattatcattaataattctcatacttaattacttt 5773193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 138; Significance: 5e-72; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 5743037 - 5743266
Alignment:
Q  1 aatatgggtattctccttctacttcaaagcacaaaccctaacccccaaaattctaccaatagagcttgaatatgaagttgctttacttagatgatcaatt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||    
T  5743037 aatatgggtattctccttctacttcaaagcacaaaccctaacccccaaatttataccaatagagcttgaatatgaagttgctttacttagatgatcaatt 5743136  T
Q  101 attcttaaggatga---------------------ttgatttgggaaaggaaggattaagaaatggaagaagaggaatgagggacagagagctaacggga 179  Q
    ||||||||||||||                     ||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||    
T  5743137 attcttaaggatgattgatttggtgataaaattggttgatttgggaaaggaaggaaaaagaaatggaagaagaggaatgagggacagagagctaacggga 5743236  T
Q  180 gtgagaggagaatggaaagggaaagttatg 209  Q
    |||| ||||||| |||||||||||||||||    
T  5743237 gtgataggagaaaggaaagggaaagttatg 5743266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 343 - 386
Target Start/End: Complemental strand, 11148080 - 11148037
Alignment:
Q  343 ttgttgatagggtgttgtttcttaaaacaatttctgtatttttt 386  Q
    ||||||||||| |||||||||||||||||| ||||| |||||||    
T  11148080 ttgttgataggttgttgtttcttaaaacaaattctgcatttttt 11148037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000009; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 343 - 386
Target Start/End: Complemental strand, 23256518 - 23256475
Alignment:
Q  343 ttgttgatagggtgttgtttcttaaaacaatttctgtatttttt 386  Q
    ||||||||||| |||||||||||||||||| ||||| |||||||    
T  23256518 ttgttgataggttgttgtttcttaaaacaaattctgcatttttt 23256475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 343 - 386
Target Start/End: Complemental strand, 32390264 - 32390221
Alignment:
Q  343 ttgttgatagggtgttgtttcttaaaacaatttctgtatttttt 386  Q
    ||||||||||| |||||||||||||||||| ||||| |||||||    
T  32390264 ttgttgataggttgttgtttcttaaaacaaattctgcatttttt 32390221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 343 - 386
Target Start/End: Original strand, 32390688 - 32390731
Alignment:
Q  343 ttgttgatagggtgttgtttcttaaaacaatttctgtatttttt 386  Q
    ||||||||||| |||||||||||||||||| ||||| |||||||    
T  32390688 ttgttgataggttgttgtttcttaaaacaaattctgcatttttt 32390731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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