View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1467_low_6 (Length: 327)
Name: NF1467_low_6
Description: NF1467
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1467_low_6 |
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| [»] chr1 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 18 - 327
Target Start/End: Original strand, 7022975 - 7023284
Alignment:
| Q |
18 |
ataaatgttaaattaattacctaaaaatgttccaagatttttcaacagtttgtcccactattatgctctgaaagcaacagctagcactagcaacaagcac |
117 |
Q |
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| T |
7022975 |
ataaatgttaaattaattacctaaaaatgttccaagatttttcaacagtttgtcccactattatgctctgaaagcaacagctagcactagcaacaagcac |
7023074 |
T |
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| Q |
118 |
atatttctatccctccattgatatataaagggtagaggccaatgtctaactcttcattggatcattcacacaacactaaattttcttaccatcattttct |
217 |
Q |
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| T |
7023075 |
atttttctatccctccattggtatataaagggtagaggccaatgtctaactcttcattggatcattcacacaacactaaattttcttaccatcattttct |
7023174 |
T |
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| Q |
218 |
tatcttataaatttatatataagtgttgctagaatgtcctcaagttcagcttggacaacaaagcagaacaaaagatttgagaatgctttggccatctatg |
317 |
Q |
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| T |
7023175 |
tatcttataaatttatatataagtgttgctagaatgtcctcaagttcagcttggacaacaaagcagaacaaaagatttgagaatgctttggccatctatg |
7023274 |
T |
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| Q |
318 |
acaaggacac |
327 |
Q |
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| T |
7023275 |
acaaggacac |
7023284 |
T |
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Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 268 - 327
Target Start/End: Original strand, 52365354 - 52365413
Alignment:
| Q |
268 |
ttggacaacaaagcagaacaaaagatttgagaatgctttggccatctatgacaaggacac |
327 |
Q |
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| T |
52365354 |
ttggacaacaaagcagaacaaaagatttgagaatgcgttggcaatgttggacaaggacac |
52365413 |
T |
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