View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1467_low_7 (Length: 317)

Name: NF1467_low_7
Description: NF1467
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1467_low_7
NF1467_low_7
[»] chr1 (2 HSPs)
chr1 (10-300)||(1313691-1313981)
chr1 (223-300)||(1294680-1294757)
[»] scaffold0245 (1 HSPs)
scaffold0245 (223-300)||(22590-22667)


Alignment Details
Target: chr1 (Bit Score: 255; Significance: 1e-142; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 10 - 300
Target Start/End: Complemental strand, 1313981 - 1313691
Alignment:
Q  10 attatactgttcagatatttaacaattgaatgcagaaaaacacacgtttaattttattattccccaaatttgagtggaagaaaaaagctaggtattcgat 109  Q
    |||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1313981 attatactgttcggatatttaacgattgaatgcagaaaaacacacgtttaattttattattccccaaatttgagtggaagaaaaaagctaggtattcgat 1313882  T
Q  110 ggaatgggatggggtttgttccatcatatcctattttaaagaattcaactattttatagtttttacgattccatttcatcccgtttgtcaatctaaacac 209  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||| ||||||||||||||||||    
T  1313881 ggaatgggatggggttcgttccatcatatcctattttaaagaattcaactatggtatagtttttacgattccatttcatcctgtttgtcaatctaaacac 1313782  T
Q  210 agccttggtatagtgcttgcaattttttgggcataaaccttctagttcctagggaaaaggagctattgtaatctggttcacactttgaaac 300  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| |||||||||||    
T  1313781 agccttggtatagtgcttgcaattttttgggcatagaccttctagttcccagggaaaaggagctattgtaatctggttcgcactttgaaac 1313691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 223 - 300
Target Start/End: Complemental strand, 1294757 - 1294680
Alignment:
Q  223 tgcttgcaattttttgggcataaaccttctagttcctagggaaaaggagctattgtaatctggttcacactttgaaac 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||    
T  1294757 tgcttgcaattttttgggcataaaccttctagttcctagggaaaaggagctattgtaatgtggttcgcactttgaaac 1294680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0245 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: scaffold0245
Description:

Target: scaffold0245; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 223 - 300
Target Start/End: Complemental strand, 22667 - 22590
Alignment:
Q  223 tgcttgcaattttttgggcataaaccttctagttcctagggaaaaggagctattgtaatctggttcacactttgaaac 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||    
T  22667 tgcttgcaattttttgggcataaaccttctagttcctagggaaaaggagctattgtaatgtggttcgcactttgaaac 22590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University