View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14680_high_2 (Length: 654)
Name: NF14680_high_2
Description: NF14680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14680_high_2 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 564; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 564; E-Value: 0
Query Start/End: Original strand, 35 - 649
Target Start/End: Original strand, 43436717 - 43437332
Alignment:
| Q |
35 |
gattggttattcgataatgcnnnnnnnngcaaaggataaccagtcgcataacaatgacaaagcgatatggatttatcttagaggatcgaatagaaacctt |
134 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43436717 |
gattggttattcgataatgcaagaaaaagcaaaggataaccagtcgcataacaatgacaaagcgatatggatttatcttagaggatcgaatagaaacctt |
43436816 |
T |
|
| Q |
135 |
cctagaaagaggttgccgagcttcatcattcctacataaacaaagaaagctgatataagcatttt-tcggaaaaatttgtctcttagcataagtcctact |
233 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
43436817 |
cctagaaagaggttgccgagcttcatcattcctatataaacaaagaaagctgatataagcattttttcggaaaaatttgtctcttagcataagtcctact |
43436916 |
T |
|
| Q |
234 |
tcaaattactagatacacttgttatttttcagatatacccctacttaatactaataacttgggagacaagaagtcatagttgaacacaaaatctatatac |
333 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43436917 |
tcaaattactagatacacttgttatttttcagatatacccctacttaatattaataacttgggagacaagaagtcatagttgaacacaaaatctatatac |
43437016 |
T |
|
| Q |
334 |
aacggggtattttatgagcatttatatatcaaatgaacatattaaatacattatctatttttcttaatatgcgtgaaaattgcaaaaggggcttataata |
433 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
43437017 |
aacggggtattttatgagcatttatatatcaaatgaacatattaaatacattatctatttttcttaatatgcgtgaaaatcgcaaaaggggcttataata |
43437116 |
T |
|
| Q |
434 |
aatgtgagaggtaataaaggaaatactaacaacaacgaatcatcaactggtacatcagatctggaatcaacatctccatcgcctctttcagaagaagctt |
533 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43437117 |
aatgagagaggtaataaaggaaatactaacaacaacgaatcatcaacaggtacatcagatctggaatcaacatctccatcgcctctttcagaagaagctt |
43437216 |
T |
|
| Q |
534 |
ggcttgagctcattggaacagcattcttttccttcttcatcttccacgcgtcaactctttctttccacgctatatttcccagtcctgcatccgcaaccct |
633 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43437217 |
ggcttgagctcattggaacagcattcttttccttcttcatcttccacgcgtcaactctttctttccacgctatatttcccagtcctgcatccgcaaccct |
43437316 |
T |
|
| Q |
634 |
ggtatttgctgcagaa |
649 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
43437317 |
ggtatttgctgcagaa |
43437332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 104; Significance: 2e-51; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 281 - 614
Target Start/End: Original strand, 13827361 - 13827683
Alignment:
| Q |
281 |
atactaataacttgggagacaagaagtcatagttgaacacaaaatctatatacaacggggtattttatgagcatttatatatcaaatgaacatattaaat |
380 |
Q |
| |
|
||||||||||||||||||||||||||| | ||||||||||| |||| |||| || |||||| | ||||||| ||||| ||| ||| ||| |
|
|
| T |
13827361 |
atactaataacttgggagacaagaagttagagttgaacacatcatctgtatataa-----------atgagcctctatatatgaaatggacacattgaat |
13827449 |
T |
|
| Q |
381 |
acattatctatttttcttaatatgcgtgaaaattgcaaaaggggcttataataaatgtgagaggtaataaaggaaatactaacaacaacgaatcatcaac |
480 |
Q |
| |
|
|||||||||| ||||||| |||| |||||||||| ||||||||| |||||||||| |||| || ||||||||||||| ||||||| ||||||||| | |
|
|
| T |
13827450 |
acattatctacttttcttgatatatgtgaaaattggaaaaggggcatataataaataacagagatagtaaaggaaatactcacaacaatgaatcatcagc |
13827549 |
T |
|
| Q |
481 |
tggtacatcagatctggaatcaacatctccatcgcctctttcagaagaagcttggcttgagctcattggaacagcattcttttccttcttcatcttccac |
580 |
Q |
| |
|
| |||||||||||| ||||| ||||||| | ||||||||||||| |||||||| || |||||| ||| ||||||||||||| |||||||||||| |
|
|
| T |
13827550 |
aaggacatcagatctgccatcaatatctccagcccctctttcagaagcagcttggcctgtgctcatcggagcagcattcttttctggcttcatcttccag |
13827649 |
T |
|
| Q |
581 |
gcgtcaactctttctttccacgctatatttccca |
614 |
Q |
| |
|
|||||||||||||| |||| |||| ||| |||| |
|
|
| T |
13827650 |
ccgtcaactctttctctccatgctacattgccca |
13827683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 63 - 187
Target Start/End: Original strand, 13826742 - 13826865
Alignment:
| Q |
63 |
gcaaaggataaccagtcgcataacaatgacaaagcgatatggatttatcttagaggatcgaatagaaaccttcctagaaagaggttgccgagcttcatca |
162 |
Q |
| |
|
|||||||| ||||||||||| ||||||||| || ||||| ||||||||| |||| ||| |||||||||||||||| |||||||| ||||||||||||||| |
|
|
| T |
13826742 |
gcaaaggacaaccagtcgcagaacaatgaccaatcgataaggatttatcctagatgatggaatagaaaccttcctggaaagaggctgccgagcttcatca |
13826841 |
T |
|
| Q |
163 |
ttcctacataaacaaagaaagctga |
187 |
Q |
| |
|
||||| ||| |||||||||| |||| |
|
|
| T |
13826842 |
ttcctgcat-aacaaagaaaactga |
13826865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 63 - 170
Target Start/End: Complemental strand, 43947835 - 43947728
Alignment:
| Q |
63 |
gcaaaggataaccagtcgcataacaatgacaaagcgatatggatttatcttagaggatcgaatagaaaccttcctagaaagaggttgccgagcttcatca |
162 |
Q |
| |
|
|||||||||||||| | ||| ||||||||| | |||||||||| ||||| |||||||| |||||||||||||||| || || |||||||||||| ||||| |
|
|
| T |
43947835 |
gcaaaggataaccaattgcagaacaatgaccatgcgatatggaattatcctagaggatggaatagaaaccttcctggatagtggttgccgagctacatca |
43947736 |
T |
|
| Q |
163 |
ttcctaca |
170 |
Q |
| |
|
||| |||| |
|
|
| T |
43947735 |
ttcataca |
43947728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 55; Significance: 3e-22; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 66 - 168
Target Start/End: Complemental strand, 9477157 - 9477055
Alignment:
| Q |
66 |
aaggataaccagtcgcataacaatgacaaagcgatatggatttatcttagaggatcgaatagaaaccttcctagaaagaggttgccgagcttcatcattc |
165 |
Q |
| |
|
||||||||| || |||| ||||||||| | ||||||||||||||| |||| ||| |||||||||||||||| ||||| ||||| ||||||||||||||| |
|
|
| T |
9477157 |
aaggataacaagccgcagaacaatgaccatacgatatggatttatcctagaagatggaatagaaaccttcctcgaaagtggttgtcgagcttcatcattc |
9477058 |
T |
|
| Q |
166 |
cta |
168 |
Q |
| |
|
||| |
|
|
| T |
9477057 |
cta |
9477055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 515 - 646
Target Start/End: Complemental strand, 9476728 - 9476594
Alignment:
| Q |
515 |
cctctttcagaagaagcttggcttgagctcattggaacagcattctttt---ccttcttcatcttccacgcgtcaactctttctttccacgctatatttc |
611 |
Q |
| |
|
||||||||||||| |||||| | || |||||||||| ||| |||||| | | | |||||| ||||| | ||||||||||||||||| |||| ||| | |
|
|
| T |
9476728 |
cctctttcagaagtagcttgacctgtgctcattggagcagtattcttattatcgtgcttcattttccagccatcaactctttctttccaagctacattac |
9476629 |
T |
|
| Q |
612 |
ccagtcctgcatccgcaaccctggtatttgctgca |
646 |
Q |
| |
|
||| ||||| || |||||||| | ||||||||| |
|
|
| T |
9476628 |
ccaatcctggttcaacaaccctgatgtttgctgca |
9476594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 378 - 434
Target Start/End: Original strand, 3865824 - 3865880
Alignment:
| Q |
378 |
aatacattatctatttttcttaatatgcgtgaaaattgcaaaaggggcttataataa |
434 |
Q |
| |
|
|||||| || ||||| |||||||||| |||||||||||||||| |||||||||||| |
|
|
| T |
3865824 |
aatacactacctattcttcttaatatatgtgaaaattgcaaaagaggcttataataa |
3865880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University