View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14680_high_9 (Length: 285)
Name: NF14680_high_9
Description: NF14680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14680_high_9 |
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Alignment Details
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 3 - 262
Target Start/End: Complemental strand, 43778527 - 43778268
Alignment:
| Q |
3 |
attatactagaatgtgcgccttaatatatcttttattttaaaatttaggtnnnnnnntgaatatgatactgtcttgtttagtggagtaatagtataataa |
102 |
Q |
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| T |
43778527 |
attatattagaatgtgcgccttaaaatatcttttattttaacatttaggtaaaacaatgattatgatactgtcttgtttagtggagtaatagtataataa |
43778428 |
T |
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| Q |
103 |
agcagttaaacatagcatataaatcggaccaaaattttactaatatatagatatacttcttaataaaatgtagagaggcaacttttggctgaacaggtta |
202 |
Q |
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| T |
43778427 |
agcagttaaacatagcatataaatcggaccaaaattttactaatatatagatatacttcttaataaaatgtagagagacaacttttggctgaacaggtta |
43778328 |
T |
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| Q |
203 |
taaagatttctatattcaattacagctaaagagaatcgcaactcattttccaaacataaa |
262 |
Q |
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| T |
43778327 |
taaagatttctatattcaattacagctaaagagaatcgcaactcattttccaaacataaa |
43778268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 230 - 279
Target Start/End: Complemental strand, 43778269 - 43778220
Alignment:
| Q |
230 |
aaagagaatcgcaactcattttccaaacataaaccacaatattgatgatg |
279 |
Q |
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| T |
43778269 |
aaagagaatcgcaactcattttccaaacataaaccacaatattgttgatg |
43778220 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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