View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14680_low_15 (Length: 222)
Name: NF14680_low_15
Description: NF14680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14680_low_15 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 187; Significance: 1e-101; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 14 - 204
Target Start/End: Complemental strand, 5476391 - 5476201
Alignment:
| Q |
14 |
cataggtattgagctcaaactttagaacatgaccagtttggttgtcacattcaatacccttccaattacagcaatcttccccgacccatgacgaaaggca |
113 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5476391 |
cataggtattgagctcaaactttagaatatgaccagtttggttgtcacattcaatacccttccaattacagcaatcttccccgacccatgacgaaaggca |
5476292 |
T |
|
| Q |
114 |
attggaaggatcattgagatcttttttgatgttaaggagtgccactctctcttccttaatgcaaagagtgctaacattaaggctcttaact |
204 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5476291 |
attggaaggatcattgagatcttttttgatgttaaggagtgccactctctcttccttaatgcaaagagtgctaacattaaggctcttaact |
5476201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 22 - 197
Target Start/End: Complemental strand, 5484319 - 5484144
Alignment:
| Q |
22 |
ttgagctcaaactttagaacatgaccagtttggttgtcacattcaatacccttccaattacagcaatcttccccgacccatgacgaaaggcaattggaag |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||||||||| | |
|
|
| T |
5484319 |
ttgagctcaaactttagaacatgaccagtttggttgtcacattcaatacccttccaattacagcaatcttccccaactcatgaagaaaggcaattggatg |
5484220 |
T |
|
| Q |
122 |
gatcattgagatcttttttgatgttaaggagtgccactctctcttccttaatgcaaagagtgctaacattaaggct |
197 |
Q |
| |
|
|||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5484219 |
gatctttgagatctattttgatgttaaggagtgccactctctcttccttaatgcaaagagtgctaacattaaggct |
5484144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 24 - 197
Target Start/End: Complemental strand, 5489502 - 5489329
Alignment:
| Q |
24 |
gagctcaaactttagaacatgaccagtttggttgtcacattcaatacccttccaattacagcaatcttccccgacccatgacgaaaggcaattggaagga |
123 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |||||||| ||||||||||| |||||| |
|
|
| T |
5489502 |
gagctcaaacttttgaacatgaccagtttggttgtcacattctatacccttccaattacaacaatcttccccaacccatgaagaaaggcaatttgaagga |
5489403 |
T |
|
| Q |
124 |
tcattgagatcttttttgatgttaaggagtgccactctctcttccttaatgcaaagagtgctaacattaaggct |
197 |
Q |
| |
|
|| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
5489402 |
tccttgagatcttttttgattttaaggagtgccactctctcttccttaatgcaaagagtactaacattaaggct |
5489329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 23 - 192
Target Start/End: Complemental strand, 5495285 - 5495116
Alignment:
| Q |
23 |
tgagctcaaactttagaacatgaccagtttggttgtcacattcaatacccttccaattacagcaatcttccccgacccatgacgaaaggcaattggaagg |
122 |
Q |
| |
|
|||||| || ||||| |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||| |||||||| || |
|
|
| T |
5495285 |
tgagcttaagctttaaaacatgaccagtttggttgttacattgtatacccttccaattacagcaatcttccccgacccatgaagaaagacaattggatgg |
5495186 |
T |
|
| Q |
123 |
atcattgagatcttttttgatgttaaggagtgccactctctcttccttaatgcaaagagtgctaacatta |
192 |
Q |
| |
|
||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5495185 |
atctttgagatcttttttgattttaaggagtgccactctctcttccttaatgcaaagagtgctaacatta |
5495116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 45 - 204
Target Start/End: Complemental strand, 5481447 - 5481288
Alignment:
| Q |
45 |
accagtttggttgtcacattcaatacccttccaattacagcaatcttccccgacccatgacgaaaggcaattggaaggatcattgagatcttttttgatg |
144 |
Q |
| |
|
||||||||| | ||||||||| ||||| |||| ||| ||||||| ||| |||||||| |||||||||||| |||||||||||||||||||||||| | |
|
|
| T |
5481447 |
accagtttgatagtcacattctataccaatccagcgacaacaatctttcccaacccatgaagaaaggcaattgtaaggatcattgagatcttttttgacg |
5481348 |
T |
|
| Q |
145 |
ttaaggagtgccactctctcttccttaatgcaaagagtgctaacattaaggctcttaact |
204 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
5481347 |
ttaaggagtgccattctctcttccttaatgcaaagagtgctaacattaaggcttttaact |
5481288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 55 - 204
Target Start/End: Complemental strand, 5466684 - 5466535
Alignment:
| Q |
55 |
ttgtcacattcaatacccttccaattacagcaatcttccccgacccatgacgaaaggcaattggaaggatcattgagatcttttttgatgttaaggagtg |
154 |
Q |
| |
|
|||||||||| ||||| |||| | ||||||||| | ||| ||||| || |||||||||||||||||||| || ||||||||||| ||||||||||||| |
|
|
| T |
5466684 |
ttgtcacattgtataccaatccagtcacagcaatccttcccaacccaagaggaaaggcaattggaaggatcgttcagatctttttttatgttaaggagtg |
5466585 |
T |
|
| Q |
155 |
ccactctctcttccttaatgcaaagagtgctaacattaaggctcttaact |
204 |
Q |
| |
|
|||| |||||||| |||||||||||||||||||||| ||||||| ||||| |
|
|
| T |
5466584 |
ccaccctctcttctttaatgcaaagagtgctaacatcaaggctcataact |
5466535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University