View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14680_low_2 (Length: 668)
Name: NF14680_low_2
Description: NF14680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14680_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 387; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 20 - 455
Target Start/End: Original strand, 43090554 - 43090992
Alignment:
| Q |
20 |
gggctttatacattacacacatgaacaacttacaaagtaacaaaccatgttatgttactattaaacaaatagaannnnnnnatgtagtaaaaaagaatca |
119 |
Q |
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| T |
43090554 |
gggctttatacattacacacatgaacaacttacaaagtaacaaaccatgttatgttactattaaacaaatagaattttt--atgtagtaaaaaagaaaca |
43090651 |
T |
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| Q |
120 |
ccttggaagaatcaaattcttgaaaggtaaagcagttcaaaagttgtaaaagaagaagtggtggaaagtgaaagacccaaaattgtccatggaactcaga |
219 |
Q |
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| T |
43090652 |
ccttggaagaatcaaattcttgaaaggtaaagcagttcaaaagttgtaaaagaagaagtggtggaaagtgaaagacccaaaattgtccatggaactcaga |
43090751 |
T |
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| Q |
220 |
aaaagaagagaagtgaaacagaagaggcccacagtgaaattatatgtatgttcaatgttcattcattcatctgtccctccctatgagcgacttgtcctta |
319 |
Q |
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| T |
43090752 |
aaaagaagagaagtgaaacagaagaggcccacagtgaaattatatgtatgttcaatgttcattcattcatctgtccctccctatgagcgacttgtcctta |
43090851 |
T |
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| Q |
320 |
aaaaagatagatac-----ttcagtgtcctaaaatatctgacacactcttgaatgcattcctagttaatcttcccttcccttatagttataacaaatata |
414 |
Q |
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| T |
43090852 |
aaaaagatagatacttcagttcagtgtcctaaaatatctgacacactcttgaatgcattcctagttaatcttcccatcccttatagttataacaaatata |
43090951 |
T |
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| Q |
415 |
tcaacttcttcttctgctaaatttcttcaatgtgtgtgtat |
455 |
Q |
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| T |
43090952 |
tcaacttcttcttctgctaaatttcttcaatgtgtgtgtat |
43090992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 456 - 650
Target Start/End: Original strand, 43091052 - 43091246
Alignment:
| Q |
456 |
aactccctaaatcaaagaaacagtttgtgattgtgtgactcgtaaaaagaaatcgaataattcatctttctttcttctgaatatggttctgttactttta |
555 |
Q |
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| T |
43091052 |
aactccctaaatcaaagaaaaagtttgtgattgtgtgactcgtaaaaagaaatcgaataattcatctttctttcttctgaatatggttctgttactttta |
43091151 |
T |
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| Q |
556 |
tgcattaaagctgaaccaataaaagatagctttttagatgaatcaacattgttcctttttccatctccaacaccctactactacctaatacatac |
650 |
Q |
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| T |
43091152 |
tgcattaaagctgaaccaataaaagatagctttttagatgaatcaacattgttcctttttccatctccaacaccctactactacctaatacatac |
43091246 |
T |
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