View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14680_low_6 (Length: 433)
Name: NF14680_low_6
Description: NF14680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14680_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 14 - 418
Target Start/End: Original strand, 1599230 - 1599644
Alignment:
| Q |
14 |
atgaaggttgaatgtaggttctgtggtttcaaatcgaataggaattatc---ttttccaaaaccgaactgtacttttcttgtggaaatctccaatgcaag |
110 |
Q |
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| T |
1599230 |
atgaaggttgaatgtaggttctgtggtttcaaatcgaataggaattatcatcttttccaaaaccgaactgtacttttcttgtggaaatctccaatgcaag |
1599329 |
T |
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| Q |
111 |
tggaaatcatcaatacaacaagaaatatttattatacattatctacactttccttgtggttata--ttaatttgttctactctcacttgtggagtgaagt |
208 |
Q |
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| T |
1599330 |
tggaaatcatcaatacaacaagaaatatttattatacattatctacactttccttgtggttatatattaatttgttctactctcacttgtggagtgaagt |
1599429 |
T |
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| Q |
209 |
tattattgtaattatgaggttctggtccaaaatttgacttagaaccttacacataactagatatatattttgtttgaatttcaatgattcattaatattg |
308 |
Q |
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| T |
1599430 |
tattattgtaattatgaggttctggtccaaaatttgacttagaaccttacacataactagatatatattttgtttgaatttcaatgattcattaatattg |
1599529 |
T |
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| Q |
309 |
ccgttttttaacaaaccatggtatatggaagttaaggaattctagacatgttttaaagctctaaa-----gtcccaatcagaatccctctaaaatgttat |
403 |
Q |
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| T |
1599530 |
ccgttttttaacaaaccatggtatatggaagttaaggaattttagacatgttttaaagctctaaagtcccgtcccaatcagaatccctctaaaatgttat |
1599629 |
T |
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| Q |
404 |
caaacccacaatctt |
418 |
Q |
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| T |
1599630 |
caaacccacaatctt |
1599644 |
T |
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Back To:
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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 26 - 87
Target Start/End: Complemental strand, 41222434 - 41222373
Alignment:
| Q |
26 |
tgtaggttctgtggtttcaaatcgaataggaattatcttttccaaaaccgaactgtactttt |
87 |
Q |
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| T |
41222434 |
tgtaggttatgtggtttcaaaccgaataggaactatattttcaaaacccaaattgtactttt |
41222373 |
T |
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