View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14680_low_7 (Length: 414)
Name: NF14680_low_7
Description: NF14680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14680_low_7 |
 | |
|
| [»] scaffold0016 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 12 - 395
Target Start/End: Complemental strand, 6308297 - 6307913
Alignment:
| Q |
12 |
gattattctattcaagtcatagtatggaatcaaggcggtcaattgaatttaagggacttaaatcatattaaaagatgaggt--attagagtgaaaggaaa |
109 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |
|
|
| T |
6308297 |
gatttttctattcaagtcatagtatggaatcaaggcaatcaattgaatttaagggacttaaatcatattaaaagaggaggtgtattagagtgaaaggaaa |
6308198 |
T |
|
| Q |
110 |
taagagtgaggtatgcataaccggtaatggtttcttgtgatttagttgataataaagtcagcctggcctctaatggaaatcaaagggtaaatgtggggca |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6308197 |
taagagtgaggtatgcataaccggtaatggttttttgtgattta-ttgataataaagtcagcctggcctctaatggaaatcaaagggtaaatgtggggca |
6308099 |
T |
|
| Q |
210 |
ggtagttactcaactaataagaatacaacgggttatatttgatcacaaaattgttgaggttttcagagaagaggttacccaagaaattatatgataaaag |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6308098 |
ggtagttactcaactaataagaatacaacgggttatatttgatcacaaaattgttgaggttttcagagaagaggttacccaagaaattatatgataaaag |
6307999 |
T |
|
| Q |
310 |
tgggaaaggaatgaaatgaaacttgaatataatactcccgttttcttatctctccatgttcaagtgtaccttattacttctctata |
395 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
6307998 |
tgggaaaggaatgaaatgaaacttgaatataatactcccgttttcttatctctccatgttcaagtgtaccttattatttctctata |
6307913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 12 - 167
Target Start/End: Complemental strand, 107529 - 107375
Alignment:
| Q |
12 |
gattattctattcaagtcatagtatggaatcaaggcggtcaattgaatttaagggacttaaa-tcatattaaaagatgaggtattagagtgaaaggaaat |
110 |
Q |
| |
|
|||| |||||||||||| |||||||||||||||||| |||||||| ||||||||||||||| ||||||||| || |||||||||||||||||| ||||| |
|
|
| T |
107529 |
gatttttctattcaagttatagtatggaatcaaggcaatcaattgattttaagggacttaaaatcatattaagag-tgaggtattagagtgaaaagaaat |
107431 |
T |
|
| Q |
111 |
aagagtgaggtatgcataaccggtaatggtttcttgtgatttagttgataataaagt |
167 |
Q |
| |
|
|| ||||||||||||| ||||| |||||| ||||||||||||| |||| |||||||| |
|
|
| T |
107430 |
aaaagtgaggtatgcacaaccgctaatggcttcttgtgattta-ttgagaataaagt |
107375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 12 - 122
Target Start/End: Complemental strand, 29451348 - 29451237
Alignment:
| Q |
12 |
gattattctattcaagtcatagtatggaatcaaggcggtcaattgaatttaagggacttaaa-tcatattaaaagatgaggtattagagtgaaaggaaat |
110 |
Q |
| |
|
|||| |||||||| |||||||||||||| | ||||| ||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
29451348 |
gattcttctattccagtcatagtatggagttaaggcaaccaattgattttaagggacttaaaatcatattaaaagatgaggtattagagtgaaagggaat |
29451249 |
T |
|
| Q |
111 |
aagagtgaggta |
122 |
Q |
| |
|
|| |||| |||| |
|
|
| T |
29451248 |
aaaagtggggta |
29451237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University