View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14680_low_8 (Length: 400)
Name: NF14680_low_8
Description: NF14680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14680_low_8 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 21 - 396
Target Start/End: Original strand, 8440925 - 8441298
Alignment:
| Q |
21 |
tattacgtatcgtcttattatattcctatactatatagtcatacnnnnnnnnatcaatactagtactatatagtcatatatactaatactccaatggatg |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8440925 |
tattacgtatcgtcttattatattcctatactatatagtcatacttttttt-atcaatactagtactatatagtcatatatactaatactccaatggatg |
8441023 |
T |
|
| Q |
121 |
aatgtggtaatattttaggaacnnnnnnngcacagtgtattgttttttagtggcaaatctattaagaaaagaaaacaagaataatttcaactctcgatga |
220 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8441024 |
aatgtggtaatattttaggaacaaaaaaagcacagtgtattgttttttagtggcaaatctattaagaaaagaaaacaagaataatttcaactctcgatga |
8441123 |
T |
|
| Q |
221 |
tgtatcgtgtacgtatagatcaccaatcgcttacatttagggatctcaatattccattggtggagttaagcaattatactagtgagcacgaaataactag |
320 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
8441124 |
tgtatcgtgtacgtatagatctccaatcgcttacatt-agggatctcaatattccattggtggagttgagcaattatactagtgagcacgaaataactag |
8441222 |
T |
|
| Q |
321 |
accgtgtcacaagcttcacgtatttataaaatctgcacattcatgatcgttggatcgagatagtacggttcatatc |
396 |
Q |
| |
|
||| ||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| |||||||| |
|
|
| T |
8441223 |
accatgtcacaagcttcacgtatttataaaatccgcacatttatgatcgttggatcgagatagtacgattcatatc |
8441298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University