View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14680_low_9 (Length: 355)
Name: NF14680_low_9
Description: NF14680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14680_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 6 - 350
Target Start/End: Complemental strand, 43341093 - 43340730
Alignment:
| Q |
6 |
aagaaaattaagacactaccatct------ttttgttgttgtctgtgcagtgataaacactcccaatactacnnnnnnncttctttccctcatttccacc |
99 |
Q |
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| T |
43341093 |
aagaaaattaagacactaccatctccatctttttgttgttgtctgtgcagtgataaacactcccaatactactttttttcttctttcccttatttccacc |
43340994 |
T |
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| Q |
100 |
aaatttccttccactaacccaacagataaacaataccaaactccaacatatactctcatttca------------ttattctctttacttgagttcactt |
187 |
Q |
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| T |
43340993 |
aaatttccttccactaacccaacagataaacaataccaaactccaacatatactctcatttcatttctaccttttttattctctttacttgagttcactt |
43340894 |
T |
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| Q |
188 |
gttctttcctctcctatattattattattctcttccac-----ctgaacaacacnnnnnnntatacttacatgatattcatattattatagtagtagaag |
282 |
Q |
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| T |
43340893 |
gttctttcctctccta---tattattattctcttccacctgaactgaacaacacaaaaaaatatac-tacatgatattcatattattatagtagtagaag |
43340798 |
T |
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| Q |
283 |
ctaatcactctttacaaagcagacacacacagttagaaacataataataacaagaacatgaacatgct |
350 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
43340797 |
ctaatcactctttacaaagcagacacacacagttagaaacataataaaaacaagaacatgaacatgct |
43340730 |
T |
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