View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14681_high_10 (Length: 323)
Name: NF14681_high_10
Description: NF14681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14681_high_10 |
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Alignment Details
Target: chr4 (Bit Score: 131; Significance: 6e-68; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 1 - 176
Target Start/End: Original strand, 9813983 - 9814160
Alignment:
| Q |
1 |
ttgatgccattccagctagtgttctgttgatggaccaatctaagactaaa--ctttatcataaagtctcaattaaattcaattcatctaagattaagaaa |
98 |
Q |
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||||||||||| ||| |||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9813983 |
ttgatgccatttcagttagtattctgttgatggaccaatctaagactaaaaactttatcataaagtctcaattaaattcaattcatctaagattaagaaa |
9814082 |
T |
|
| Q |
99 |
ataatttagagtttagagtaagtttctcgcatagtaggagaagcagtggcaggatagccttagcatcatcttctggct |
176 |
Q |
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||||||||||||||||||||| || || |||||||||||||||||||||||| ||||||| ||||| ||||||||||| |
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| T |
9814083 |
ataatttagagtttagagtaaattactggcatagtaggagaagcagtggcagaatagcctcagcataatcttctggct |
9814160 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 230 - 308
Target Start/End: Original strand, 9814214 - 9814292
Alignment:
| Q |
230 |
gtacaagtcatttctcacttgctaacaagtgattatttgtgatttttgtagggttccaaagtaaatttagtcatcacag |
308 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9814214 |
gtacaagtcatttctcacttgctaacaagtgactatttgtgatttttgtagggttccaaagtaaatttagtcatcacag |
9814292 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 93
Target Start/End: Original strand, 17512764 - 17512805
Alignment:
| Q |
52 |
tttatcataaagtctcaattaaattcaattcatctaagatta |
93 |
Q |
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||||||||||| |||||||| |||||||||||| |||||||| |
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| T |
17512764 |
tttatcataaactctcaattgaattcaattcatttaagatta |
17512805 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 121; Significance: 6e-62; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 1 - 177
Target Start/End: Original strand, 42663314 - 42663490
Alignment:
| Q |
1 |
ttgatgccattccagctagtgttctgttgatggaccaatctaagactaaactttatcataaagtctcaattaaattcaattcatctaagattaagaaaat |
100 |
Q |
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|
|||||| |||| ||||||||||||| || |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42663314 |
ttgatgtcatttcagctagtgttctatttgaggactaatctaagactaaactttatcataaagtctcaattaaattcaattcatctaagattaagaaaat |
42663413 |
T |
|
| Q |
101 |
aatttagagtttagagtaagtttctcgcatagtaggagaagcagtggcaggatagccttagcatcatcttctggctg |
177 |
Q |
| |
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||||||||||||||||||| || || |||||||||||||||||||||||| ||||||| | ||||||||| |||||| |
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| T |
42663414 |
aatttagagtttagagtaaattactggcatagtaggagaagcagtggcagaatagcctcaacatcatcttatggctg |
42663490 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 230 - 305
Target Start/End: Original strand, 42663543 - 42663617
Alignment:
| Q |
230 |
gtacaagtcatttctcacttgctaacaagtgattatttgtgatttttgtagggttccaaagtaaatttagtcatca |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| |
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| T |
42663543 |
gtacaagtcatttctcacttgctaacaagtgactatttgtg-gttttgtagggttccaaagtaaatttagtcatca |
42663617 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 117; Significance: 1e-59; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 177
Target Start/End: Original strand, 23165373 - 23165549
Alignment:
| Q |
1 |
ttgatgccattccagctagtgttctgttgatggaccaatctaagactaaactttatcataaagtctcaattaaattcaattcatctaagattaagaaaat |
100 |
Q |
| |
|
|||||| |||| |||||||||||||||| |||| |||||||||||||| ||||||||||||||||||||||||| ||||||| ||||||||||||||| |
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| T |
23165373 |
ttgatgtcatttcagctagtgttctgtttgaggactaatctaagactaaaatttatcataaagtctcaattaaattaaattcatataagattaagaaaat |
23165472 |
T |
|
| Q |
101 |
aatttagagtttagagtaagtttctcgcatagtaggagaagcagtggcaggatagccttagcatcatcttctggctg |
177 |
Q |
| |
|
||||||||||||||||||| || || |||||||||||||||||||||||| ||||||| | |||||||||||||||| |
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| T |
23165473 |
aatttagagtttagagtaaattactggcatagtaggagaagcagtggcagaatagcctcaacatcatcttctggctg |
23165549 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 1 - 157
Target Start/End: Complemental strand, 29182860 - 29182704
Alignment:
| Q |
1 |
ttgatgccattccagctagtgttctgttgatggaccaatctaagactaaactttatcataaagtctcaattaaattcaattcatctaagattaagaaaat |
100 |
Q |
| |
|
|||||| |||| ||| |||||||||| ||| ||| ||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||| |
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| T |
29182860 |
ttgatgtcatttcagttagtgttctgctgaaggatcaatctaagactaaactttatcataaaatctcaattaaattcaattaatctaagattaagaaaat |
29182761 |
T |
|
| Q |
101 |
aatttagagtttagagtaagtttctcgcatagtaggagaagcagtggcaggatagcc |
157 |
Q |
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|||||||||||||||||| || || |||||||||||||||||||||||| |||||| |
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| T |
29182760 |
aatttagagtttagagtatattactggcatagtaggagaagcagtggcagaatagcc |
29182704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 230 - 305
Target Start/End: Original strand, 23165603 - 23165678
Alignment:
| Q |
230 |
gtacaagtcatttctcacttgctaacaagtgattatttgtgatttttgtagggttccaaagtaaatttagtcatca |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
23165603 |
gtacaagtcatttctcacttgctaacaagtgactatttgtggtttttgtagggttccaaagtaaatttagtcatca |
23165678 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 16 - 55
Target Start/End: Original strand, 31706572 - 31706611
Alignment:
| Q |
16 |
ctagtgttctgttgatggaccaatctaagactaaacttta |
55 |
Q |
| |
|
||||||| |||||||||||||| ||||||||||||||||| |
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| T |
31706572 |
ctagtgtcctgttgatggaccactctaagactaaacttta |
31706611 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 110; Significance: 2e-55; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 170
Target Start/End: Complemental strand, 5018524 - 5018355
Alignment:
| Q |
1 |
ttgatgccattccagctagtgttctgttgatggaccaatctaagactaaactttatcataaagtctcaattaaattcaattcatctaagattaagaaaat |
100 |
Q |
| |
|
|||||| |||| ||||||||||||| || |||| |||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| |
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| T |
5018524 |
ttgatgtcatttcagctagtgttctatttgaggactaatctaagactaaactttatcataaagtctcaattaaattaaattcatgtaagattaagaaaat |
5018425 |
T |
|
| Q |
101 |
aatttagagtttagagtaagtttctcgcatagtaggagaagcagtggcaggatagccttagcatcatctt |
170 |
Q |
| |
|
||||||||||||||||||| || || |||||||||||||||||||||||| ||||||| | ||||||||| |
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|
| T |
5018424 |
aatttagagtttagagtaaattactggcatagtaggagaagcagtggcagaatagcctcaacatcatctt |
5018355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 230 - 305
Target Start/End: Complemental strand, 5018294 - 5018219
Alignment:
| Q |
230 |
gtacaagtcatttctcacttgctaacaagtgattatttgtgatttttgtagggttccaaagtaaatttagtcatca |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| |
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| T |
5018294 |
gtacaagtcatttctcacttgctaacaagtgactatttgtggtttttgtagggttccaaagtaaatttagtcatca |
5018219 |
T |
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