View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14681_high_13 (Length: 305)
Name: NF14681_high_13
Description: NF14681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14681_high_13 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 266; Significance: 1e-148; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 18 - 291
Target Start/End: Complemental strand, 1807700 - 1807427
Alignment:
| Q |
18 |
ccattcacaatcacaataaaacaagcacaaataatggctagaaccaaaccatctaacccaaaccaaggtctttggcctaaagatttagactttggaagat |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1807700 |
ccattcacaatcacaataaaacaagcacaaacaatggctagaaccaaaccatctaacccaaaccaaggtctttggcctaaagatttagactttggaagat |
1807601 |
T |
|
| Q |
118 |
cttgcacttttctcacatatttaacagctgttaaagcaaatgacaaaccttgtgctagttgaattcccctcacaacagataaaggaactaacttgtaaac |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
1807600 |
cttgcacttttctcacatatttaacagctgttaaagcaaatgacaaaccttgtgctagttgaattcccctcacaacagataaaggaactaacttgtacac |
1807501 |
T |
|
| Q |
218 |
cagctgcatcaatcctgtgataccaagaacgaagagcacgccaccggtcaagattccggctgtcattatctctg |
291 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1807500 |
cagctgcatcaatcctgtgataccaagaacgaagagcacgccaccggtcaagattccggctgtcattatctctg |
1807427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 16 - 229
Target Start/End: Complemental strand, 1875342 - 1875129
Alignment:
| Q |
16 |
caccattcacaatcacaataaaacaagcacaaataatggctagaaccaaaccatctaacccaaaccaaggtctttggcctaaagatttagactttggaag |
115 |
Q |
| |
|
||||||||||||| ||||| |||||| |||||| |||||||| |||||| |||||||| ||||||||||||||||| ||||||| ||||||||||||||| |
|
|
| T |
1875342 |
caccattcacaattacaatgaaacaaacacaaacaatggctaaaaccaatccatctaatccaaaccaaggtctttgacctaaagctttagactttggaag |
1875243 |
T |
|
| Q |
116 |
atcttgcacttttctcacatatttaacagctgttaaagcaaatgacaaaccttgtgctagttgaattcccctcacaacagataaaggaactaacttgtaa |
215 |
Q |
| |
|
|||||||| ||| ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
1875242 |
atcttgcattttcctcacatatttaacagcagttaaagcaaatgataaaccttgtgctagttgaattcccctcacaacagataaaggaataaacttgtac |
1875143 |
T |
|
| Q |
216 |
accagctgcatcaa |
229 |
Q |
| |
|
|||| ||||||||| |
|
|
| T |
1875142 |
accaactgcatcaa |
1875129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 137; Significance: 1e-71; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 18 - 274
Target Start/End: Original strand, 25798512 - 25798768
Alignment:
| Q |
18 |
ccattcacaatcacaataaaacaagcacaaataatggctagaaccaaaccatctaacccaaaccaaggtctttggcctaaagatttagactttggaagat |
117 |
Q |
| |
|
||||| ||||||| |||||||||| ||||| ||| ||||||||||| ||||||||||| |||||||| |||| || |||| ||||||||| ||||||| |
|
|
| T |
25798512 |
ccattaacaatcaatataaaacaagtacaaacaatagctagaaccaacccatctaaccctaaccaaggcctttcacccaaagctttagacttgggaagat |
25798611 |
T |
|
| Q |
118 |
cttgcacttttctcacatatttaacagctgttaaagcaaatgacaaaccttgtgctagttgaattcccctcacaacagataaaggaactaacttgtaaac |
217 |
Q |
| |
|
|||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||| || ||||| ||||||||| | |
|
|
| T |
25798612 |
cttgcactttcttcacatatttaacagcagttaaagcaaatgacaaaccttgtgctagttgaatgccccttacaacaggtagaggaataaacttgtaacc |
25798711 |
T |
|
| Q |
218 |
cagctgcatcaatcctgtgataccaagaacgaagagcacgccaccggtcaagattcc |
274 |
Q |
| |
|
||||| ||||||||||||||| ||||||| ||| | |||||| |||||||||||||| |
|
|
| T |
25798712 |
cagcttcatcaatcctgtgatgccaagaatgaacaacacgccgccggtcaagattcc |
25798768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 96 - 202
Target Start/End: Original strand, 49993732 - 49993838
Alignment:
| Q |
96 |
aaagatttagactttggaagatcttgcacttttctcacatatttaacagctgttaaagcaaatgacaaaccttgtgctagttgaattcccctcacaacag |
195 |
Q |
| |
|
||||||||||||||||| | |||||| |||||||| |||||||||| ||| ||||||||||| |||||||||||||| || ||||| || | |||||| |
|
|
| T |
49993732 |
aaagatttagactttggtaaatcttgaacttttctaacatatttaatagcagttaaagcaaaagacaaaccttgtgcaagctgaatccctcgaacaacac |
49993831 |
T |
|
| Q |
196 |
ataaagg |
202 |
Q |
| |
|
||||||| |
|
|
| T |
49993832 |
ataaagg |
49993838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University