View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14681_high_22 (Length: 230)
Name: NF14681_high_22
Description: NF14681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14681_high_22 |
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Alignment Details
Target: chr8 (Bit Score: 144; Significance: 7e-76; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 44312349 - 44312136
Alignment:
| Q |
1 |
agaaattttcaaatggtgtgaatggattcattcaagagaattgatcctacttcgccagttggtttggcttgttaactttgctttggtttgttgcttattt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
44312349 |
agaaattttcaaatggtgtgaatggattcattcaagagaattgatcctacttcgccagttggtttggcttgttaactatgctttggtttgttgcttattt |
44312250 |
T |
|
| Q |
101 |
ataacttannnnnnnatggtgaatttgttgcttaattattgatctctgattagttagtagttactctcnnnnnnnnngttgtgttctgcatttttaacag |
200 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| |||||||| |
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| T |
44312249 |
ataacttatttttttatggtgaatttgttgcttaattattgatctctgattagttagtagtta--ctcattttttttgttgtgttctgca--tttaacag |
44312154 |
T |
|
| Q |
201 |
ttgatcctatctctgctg |
218 |
Q |
| |
|
|||||||||||||||||| |
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| T |
44312153 |
ttgatcctatctctgctg |
44312136 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 166
Target Start/End: Complemental strand, 44301454 - 44301285
Alignment:
| Q |
1 |
agaaattttcaaatggtgtgaatggattcattcaa-----gagaattgatcctacttcgccagttggtttggcttgttaactttgctttggtttgttgct |
95 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| | | ||| ||||||||||| |||||| ||||||||||||| ||||||| || ||||||||| |
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| T |
44301454 |
agaaattttcaaatggtgtgaattgattcattccattccagtgaaatgatcctacttacccagtttgtttggcttgttagctttgctatgttttgttgct |
44301355 |
T |
|
| Q |
96 |
tatttataacttannnnnnnatggtgaatttgttgcttaattattgatctctgattagttagtagttactc |
166 |
Q |
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||||||||||||| ||||| ||| || |||||||||||||||||||||||||||||||||||||| |
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| T |
44301354 |
tatttataactta-ttttttatggtaaatctgctgcttaattattgatctctgattagttagtagttactc |
44301285 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 43896108 - 43896006
Alignment:
| Q |
1 |
agaaattttcaaatggtgtgaatggattcattcaagagaattgatcctacttcgccagttggtttggcttgttaactttgctttggtttgttgcttattt |
100 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| || ||| ||||||||||| ||||||| |||||||||||| ||||||| ||||||||||||||||| |
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| T |
43896108 |
agaaattttcaaatggtgtggatggattcattctagggaagtgatcctacttacccagttgctttggcttgttagctttgctatggtttgttgcttattt |
43896009 |
T |
|
| Q |
101 |
ata |
103 |
Q |
| |
|
||| |
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| T |
43896008 |
ata |
43896006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 6 - 103
Target Start/End: Complemental strand, 44306556 - 44306459
Alignment:
| Q |
6 |
ttttcaaatggtgtgaatggattcattcaagagaattgatcctacttcgccagttggtttggcttgttaactttgctttggtttgttgcttatttata |
103 |
Q |
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|
|||||||||||||||||||||||||||| || ||| ||||||||||| ||||||| |||||||||||| ||||||| |||||||||||||||||||| |
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| T |
44306556 |
ttttcaaatggtgtgaatggattcattctagggaaatgatcctacttacccagttgctttggcttgttagctttgctatggtttgttgcttatttata |
44306459 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 121 - 165
Target Start/End: Complemental strand, 43895946 - 43895902
Alignment:
| Q |
121 |
gaatttgttgcttaattattgatctctgattagttagtagttact |
165 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
43895946 |
gaatttgttgcttaattattgatctctgattatttagtagttact |
43895902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 121 - 165
Target Start/End: Complemental strand, 44306397 - 44306353
Alignment:
| Q |
121 |
gaatttgttgcttaattattgatctctgattagttagtagttact |
165 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
44306397 |
gaatttgttgcttaattattgatctctgattatttagtagttact |
44306353 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 108; Significance: 2e-54; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 166
Target Start/End: Complemental strand, 4084220 - 4084057
Alignment:
| Q |
1 |
agaaattttcaaatggtgtgaatggattcattcaagagaattgatcctacttcgccagttggtttggcttgttaactttgctttggtttgttgcttattt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||| ||||||||||| |||||||||||||||||||| |||| || ||||||||||||||||| |
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| T |
4084220 |
agaaattttcaaatggtgtgaatggattcattccagagaaatgatcctactt-accagttggtttggcttgttagctttactatggtttgttgcttattt |
4084122 |
T |
|
| Q |
101 |
ataacttannnnnnnatggtgaatttgttgcttaattattgatctctgattagttagtagttactc |
166 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4084121 |
ataactta-ttttttatggtgaatttgttgcttaattattgatctctgattagttagtagttactc |
4084057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 92
Target Start/End: Complemental strand, 18701708 - 18701618
Alignment:
| Q |
5 |
attttcaaatggtgtgaatggattcattcaagaga---attgatcctacttcgccagttggtttggcttgttaactttgctttggtttgtt |
92 |
Q |
| |
|
||||||||||||||||||| ||||||||| ||||| | ||||||||||| || |||||||||| || ||| |||||| ||||||||| |
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| T |
18701708 |
attttcaaatggtgtgaattgattcattctagagaaataatgatcctacttaccctgttggtttggtttattagctttgcaatggtttgtt |
18701618 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 8159272 - 8159311
Alignment:
| Q |
1 |
agaaattttcaaatggtgtgaatggattcattcaagagaa |
40 |
Q |
| |
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||||||||||||||||||||||| ||||||||| |||||| |
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| T |
8159272 |
agaaattttcaaatggtgtgaattgattcattctagagaa |
8159311 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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