View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14681_high_3 (Length: 439)
Name: NF14681_high_3
Description: NF14681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14681_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 238; Significance: 1e-131; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 8 - 331
Target Start/End: Complemental strand, 34770450 - 34770138
Alignment:
| Q |
8 |
aaatgggtcaaactaatatgaattgtcatgaaaatagggttttatgttgagagacacttgtatattattatagatagagtgaacaatataatagagaaca |
107 |
Q |
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| T |
34770450 |
aaatgggtcaaactaatatgaattgtcatgaaaatagggttttatgttgagagacacttgtatattattatagatagagtaaacaatataatagagaaca |
34770351 |
T |
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| Q |
108 |
catcatccttagacatgtatttccaaggcaaaaaggaaagaatgtgattagatttgatcgttataatgatagactccagtgatttcaattctcctttttg |
207 |
Q |
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| T |
34770350 |
catcatccttagacatgtatttccaaggcaaaaaggaaagaatgtgatttggtttgatcgttataatgatagactctagtgatttcaattctcctttttg |
34770251 |
T |
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| Q |
208 |
agtgcttattttcaaaacgaatattaaatcatctttctatcatcttacatcttttatttaaaacaacaatgtctattattttgcatatttaggaagnnnn |
307 |
Q |
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| T |
34770250 |
agtgcttattttcaaaactaatattaaatca-----------tcttacatcttttatttaaaacaacaatatctattattttgcatatttaggaagaaaa |
34770162 |
T |
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| Q |
308 |
nnnngtcaccttgatgattacaag |
331 |
Q |
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| T |
34770161 |
aaaagtcaccttgatgattacaag |
34770138 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 216 - 272
Target Start/End: Original strand, 22676449 - 22676505
Alignment:
| Q |
216 |
ttttcaaaacgaatattaaatcatctttctatcatcttacatcttttatttaaaaca |
272 |
Q |
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| T |
22676449 |
ttttcaaaacaaatattaaatcgtctttcaatcatcttgcatcttttattaaaaaca |
22676505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 315 - 367
Target Start/End: Complemental strand, 18609889 - 18609837
Alignment:
| Q |
315 |
accttgatgattacaagtccttgtgggatcaatattttattacaataataaaa |
367 |
Q |
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| T |
18609889 |
accttgatgatcataagtccctgtgggatcaatattttattacgacaataaaa |
18609837 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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