View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14681_high_9 (Length: 346)

Name: NF14681_high_9
Description: NF14681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14681_high_9
NF14681_high_9
[»] chr1 (1 HSPs)
chr1 (18-346)||(55744-56072)


Alignment Details
Target: chr1 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 18 - 346
Target Start/End: Original strand, 55744 - 56072
Alignment:
Q  18 acaattgcaaatttaatcacaattaataatagattcaacaacacattgctaatcaagatatatacaaaaacagaatcagaaaatccaaaacttataaacg 117  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55744 acaattgcaaatttaatcacaatgaataatagattcaacaacacattgctaatcaagatatatacaaaaacagaatcagaaaatccaaaacttataaacg 55843  T
Q  118 aaccgtaaacaaaatgcatagattacgctcctaagaaacgaaaatggaaaatgtggctatgagtgcgagatgcacatttatctcagtgttcaaaaaattg 217  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  55844 aaccataaacaaaatgcatagattacgctcctaagaaacgaaaatggaaaatgttgctatgagtgcgagatgcacatttatctcagtgttcaaaaaattg 55943  T
Q  218 aaaacaattgcaacatgaagaacatttttcagcaaagattgaaaaggaagtaatcagatataaacctttctcatattctcgaacactgtcgagtgtaaaa 317  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||    
T  55944 aaaacgattgcaacatgaagaacatttttcagcaaagattgaaaaggaagtaatcagatataaacctttatcatattctcgaacactgtcaagtgtaaaa 56043  T
Q  318 ataatactttagctacttacaccccctat 346  Q
    |||||| ||||||||||||||||||||||    
T  56044 ataataatttagctacttacaccccctat 56072  T

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