View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14681_low_12 (Length: 320)
Name: NF14681_low_12
Description: NF14681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14681_low_12 |
 | |
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Alignment Details
Target: chr3 (Bit Score: 289; Significance: 1e-162; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 1 - 305
Target Start/End: Complemental strand, 24719728 - 24719424
Alignment:
| Q |
1 |
atgaaaatagatttctcattaatgaattgagctagtacaagttgtatatatacgcaagagtgtctctatgttagcttattatgtgtgacaaacatgagat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24719728 |
atgaaaatagatttctcattaatgaattgagctagtacaagttgtatatatacgcaagagtgtctctatgttagcttattatgtgtgacaaacatgagat |
24719629 |
T |
|
| Q |
101 |
cactaacatttaactaaatcttaactatctaataattacctgttacacaagtaatcattctctaactaactgcaactaatcgcttaacaatctaatgatg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
24719628 |
cactaacatttaactaaatcttaactatctaataattacctgttacactagtaatcattctctaactaactgcaactaatcgcttaacaatctaatgatg |
24719529 |
T |
|
| Q |
201 |
gtgtgataatatataccctttatctctacaagaacactagtgttattagttttctcacatatcatttgtcttagttttccatgctattagtgtattagaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| |
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|
| T |
24719528 |
gtgtgataatatataccctttatctctacaagaacactagtgttattagttttctcacatatcattagtcttagttttccatgctattagtttattagac |
24719429 |
T |
|
| Q |
301 |
taata |
305 |
Q |
| |
|
||||| |
|
|
| T |
24719428 |
taata |
24719424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 1 - 305
Target Start/End: Complemental strand, 24678286 - 24677993
Alignment:
| Q |
1 |
atgaaaatagatttctcattaatgaattgagctagtacaagttgtatatatacgcaagagtgtctctatgttagcttattatgtgtgacaaacatgagat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| |||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
24678286 |
atgaaaatagatttctcattaatgaattgagatagtacaagttgtatatatacacaagattgtctcgatgttagcttattatgtgtgacaaacatgagat |
24678187 |
T |
|
| Q |
101 |
cactaacatttaactaaatcttaactatctaataattacctgttacacaagtaatcattctctaactaactgcaactaatcgcttaacaatctaatgatg |
200 |
Q |
| |
|
| ||||| |||||||||| |||| ||| | | ||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
24678186 |
cgctaac-----------tcttaactatttaatgattccttattacacacgtaatcattctctaactaactgcaactaattgcttaacaatctaatgatg |
24678098 |
T |
|
| Q |
201 |
gtgtgataatatataccctttatctctacaagaacactagtgttattagttttctcacatatcatttgtcttagttttccatgctattagtgtattagaa |
300 |
Q |
| |
|
|||||||||||||||||| |||||| |||||||||||| |||| ||||||||| |||||||||||| |||| | ||||||||||||||||||||||||| |
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|
| T |
24678097 |
gtgtgataatatataccccttatctgtacaagaacacttgtgtcattagttttttcacatatcattagtctcaattttccatgctattagtgtattagac |
24677998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 4 - 166
Target Start/End: Original strand, 10876104 - 10876255
Alignment:
| Q |
4 |
aaaatagatttctcattaatgaattgagctagtacaagttgtatatatacgcaagagtgtctctatgttagcttattatgtgtgacaaacatgagatcac |
103 |
Q |
| |
|
||||||||||||||||||||||||| |||| | ||||||||||||||||| |||||||||||||||||||||||| |||||| ||||||| | ||| |
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|
| T |
10876104 |
aaaatagatttctcattaatgaattaagcttgaacaagttgtatatatacacaagagtgtctctatgttagcttaccatgtgtaacaaacacaatatc-- |
10876201 |
T |
|
| Q |
104 |
taacatttaactaaatcttaactatctaataattacctgttacacaagtaatcattctctaac |
166 |
Q |
| |
|
||||| |||||||||| |||| ||||| |||| ||||||||||||||||||||| |
|
|
| T |
10876202 |
---------actaagtcttaactatataatgattacttgttgcacaagtaatcattctctaac |
10876255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 9 - 171
Target Start/End: Original strand, 5301918 - 5302069
Alignment:
| Q |
9 |
agatttctcattaatgaattgagctagtacaagttgtatatatacgcaagagtgtctctatgttagcttattatgtgtgacaaacatgagatcactaaca |
108 |
Q |
| |
|
|||||||| |||||||||||||| ||||| |||||| || | ||| |||||||||||| ||||||||||||||||||| |||||| ||||| ||||| |
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|
| T |
5301918 |
agatttcttattaatgaattgagttagtagaagttgaatgtgtacacaagagtgtctccatgttagcttattatgtgtagcaaacacaagatcgctaac- |
5302016 |
T |
|
| Q |
109 |
tttaactaaatcttaactatctaataattacctgttacacaagtaatcattctctaactaact |
171 |
Q |
| |
|
||||||||||||||| | ||| |||| ||||| |||||||||||||||||||| |
|
|
| T |
5302017 |
----------tcttaactatctaatgaatacttgttgcacaaataatcattctctaactaact |
5302069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 74; Significance: 6e-34; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 19242597 - 19242504
Alignment:
| Q |
1 |
atgaaaatagatttctcattaatgaattgagctagtacaagttgtatatatacgcaagagtgtctctatgttagcttattatgtgtgacaaaca |
94 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||| ||||||||| ||| |||||||||||||||||||||||||||| ||||||| |
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|
| T |
19242597 |
atgaaaatagatttctcattgatgaattgagctagtacaagttttatatatacacaaaagtgtctctatgttagcttattatgtgtaacaaaca |
19242504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 172
Target Start/End: Original strand, 11357249 - 11357428
Alignment:
| Q |
1 |
atgaaaatagatttctcattaatgaattgagctagtacaagttgtatatatacgcaagagtgtctctatgttagcttattatgtgtgacaaacatgagat |
100 |
Q |
| |
|
|||||||||||||| |||||| ||||| ||||||||||||||||||||||||| || ||| |||||||||||||||||||||||| || ||||| |||| |
|
|
| T |
11357249 |
atgaaaatagatttttcattattgaatagagctagtacaagttgtatatatacaaaatagtttctctatgttagcttattatgtgtaaccaacataagat |
11357348 |
T |
|
| Q |
101 |
cacta--------acatttaactaaatcttaactatctaataattacctgttacacaagtaatcattctctaactaactg |
172 |
Q |
| |
|
|||| ||| ||| |||| | |||||||||||| ||||| ||||||||||||||| | |||||||||||| |
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|
| T |
11357349 |
tactaaattacacacacttagctaacttttaactatctaacgattacttgttacacaagtaatagatttctaactaactg |
11357428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 176
Target Start/End: Original strand, 20528404 - 20528578
Alignment:
| Q |
1 |
atgaaaatagatttctcattaatgaattgagctagtacaagttgtatatatacgcaag----------agtgtctctatgttagcttattatgtgtgaca |
90 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| || || ||| ||||||||||||| | |||| || |
|
|
| T |
20528404 |
atgaaaatagatttctcattaatgaattgagctagtacaagttgtatatatacataaatatacataaaagcatctttatgttagcttatcacgtgtaacc |
20528503 |
T |
|
| Q |
91 |
aacatgagatcactaacatttaactaaatcttaactatctaataattacctgttacacaagtaatcattctctaactaactgcaac |
176 |
Q |
| |
|
||||||||||||||||| |||||| |||||||| ||||| | ||||||||||||||||||||||||||||| |||| |
|
|
| T |
20528504 |
aacatgagatcactaac-----------tcttaattatctaatgattacttattacacaagtaatcattctctaactaactacaac |
20528578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 16486051 - 16485933
Alignment:
| Q |
1 |
atgaaaatagatttctcattaatgaat----tgagctagtacaagttgtatatatacgcaagagtgtctctatgttagcttattatgtgtgacaaacatg |
96 |
Q |
| |
|
||||||||| ||||||||||||||||| | || ||||| |||||||||||||| || ||| ||||||||||||||||| |||||| ||||||| |
|
|
| T |
16486051 |
atgaaaatatatttctcattaatgaatgaatttagttagtagaagttgtatatatat--aaaagtttctctatgttagcttatcatgtgtaacaaacaca |
16485954 |
T |
|
| Q |
97 |
agatcactaacatttaactaa |
117 |
Q |
| |
|
||||||||||| |||||||| |
|
|
| T |
16485953 |
agatcactaactcttaactaa |
16485933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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