View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14681_low_15 (Length: 304)
Name: NF14681_low_15
Description: NF14681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14681_low_15 |
 | |
|
| [»] scaffold0382 (1 HSPs) |
| | |
|
| [»] scaffold0567 (1 HSPs) |
| | |
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Alignment Details
Target: chr1 (Bit Score: 220; Significance: 1e-121; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 282
Target Start/End: Original strand, 49147426 - 49147700
Alignment:
| Q |
1 |
caatgaatgatataaaagtcacaacacagaggaggaaattcatttacgcttgggtacagtaacctaaaaggagcagaatcacgttttgggattaggatta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
49147426 |
caatgaatgatataaaagtcacaacacaaaggaggaaattcattcacgcttgggtacagtaacctaaaaggagcagaatcacgttttgggattaggatta |
49147525 |
T |
|
| Q |
101 |
ttttgggaaccagctacaacagcaacacgagagatagaagaaggacttctatgataaaagaaaacttcacgagcgtaacatctctatttgtaatttcttt |
200 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| |
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|
| T |
49147526 |
ttttgggaaccagctacagcagcaacacgagagatagaagaaggacttctatgataaaagaaaacttcacgagcgtaaaatct-------taatttcttt |
49147618 |
T |
|
| Q |
201 |
tatgcatgttgtttaattctctaattatgagtagctaatttccttgtggttgagacctaaaagaatctgatgtagttctatg |
282 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| | ||||||||||||| |||||| |
|
|
| T |
49147619 |
tattcatgttgtttaattctctaattatgagtagctaatttctttgtggttgagacctagatgaatctgatgtagctctatg |
49147700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 96 - 274
Target Start/End: Complemental strand, 22453963 - 22453786
Alignment:
| Q |
96 |
gattattttgggaaccagctacaacagcaacacgagagatagaagaaggacttctatgataaaagaaaacttcacgagcgtaacatctctatttgtaatt |
195 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| |
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|
| T |
22453963 |
gattattttgggaaccagctacaacagtaacacgagagatagaagaaggacttctatgataaaagaaaacttcacgagcataacatctctgtttgtaatt |
22453864 |
T |
|
| Q |
196 |
tcttttatgcatgttgtttaattctctaattatgagtagctaatttccttgtggttgagacctaaaagaatctgatgta |
274 |
Q |
| |
|
|||||||| ||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| | |||||||||||| |
|
|
| T |
22453863 |
tcttttattcatgttgtttaattctctaataatgagtagctaatttccttgt-gttgagacctagatgaatctgatgta |
22453786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 282
Target Start/End: Complemental strand, 22457406 - 22457145
Alignment:
| Q |
1 |
caatgaatgatataaaagtcacaacacagaggaggaaattcatttacgcttgggtacagtaacctaaaaggagcagaatcacgttttgggattaggatta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||| |||||| | |||| ||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
22457406 |
caatgaatgatataaaagtcacaacacaaaggaggaaattcatgcacgctttgttacaataacctaaaaggagcagaatcacgttttgtgattaggatta |
22457307 |
T |
|
| Q |
101 |
ttttgggaaccagctacaacagcaacacgagagatagaagaaggacttctatgataaaagaaaacttcacgagcgtaacatctctatttgtaatttcttt |
200 |
Q |
| |
|
|||||||||||||||||| || |||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| |
|
|
| T |
22457306 |
ttttgggaaccagctacagaagtaacacgagagatagaagaagga-------------------cttcacgagcgtaacatctctgtttgtaatttcttt |
22457226 |
T |
|
| Q |
201 |
tatgcatgttgtttaattctctaattatgagtagctaatttccttgtggttgagacctaaaagaatctgatgtagttctatg |
282 |
Q |
| |
|
||| ||||||||||||||||||||| |||||| ||||||||| |||| ||||||||||| | ||||||||||||| |||||| |
|
|
| T |
22457225 |
tattcatgttgtttaattctctaataatgagttgctaatttctttgt-gttgagacctagatgaatctgatgtagctctatg |
22457145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 22454006 - 22453964
Alignment:
| Q |
1 |
caatgaatgatataaaagtcacaacacagaggaggaaattcat |
43 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
22454006 |
caatgaatgatataaaagtcacaacacaaaggaggaaattcat |
22453964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 22460127 - 22460090
Alignment:
| Q |
1 |
caatgaatgatataaaagtcacaacacagaggaggaaa |
38 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
22460127 |
caatgaatgatataaaagtcacaacacaaaggaggaaa |
22460090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 159 - 218
Target Start/End: Complemental strand, 23990838 - 23990778
Alignment:
| Q |
159 |
agaaaacttcacgagcgtaacatctcta-tttgtaatttcttttatgcatgttgtttaatt |
218 |
Q |
| |
|
||||||||||| |||||| |||||||| ||||||| ||||||||| |||||||||||||| |
|
|
| T |
23990838 |
agaaaacttcaggagcgtgacatctcttctttgtaacttcttttattcatgttgtttaatt |
23990778 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 175; Significance: 3e-94; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 41 - 247
Target Start/End: Complemental strand, 5827344 - 5827138
Alignment:
| Q |
41 |
catttacgcttgggtacagtaacctaaaaggagcagaatcacgttttgggattaggattattttgggaaccagctacaacagcaacacgagagatagaag |
140 |
Q |
| |
|
|||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| |
|
|
| T |
5827344 |
cattcacgctttggtacagtaacctaaaaggagcagaatcacgttttgggattaggattattttgggaaccagatacagcagcaacacgagagatagaag |
5827245 |
T |
|
| Q |
141 |
aaggacttctatgataaaagaaaacttcacgagcgtaacatctctatttgtaatttcttttatgcatgttgtttaattctctaattatgagtagctaatt |
240 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||||||| |
|
|
| T |
5827244 |
aaggacttccatgataaaagaaaacttcacgagcgtaacatctctgtttgtaatttcttttattcatgttgtttaattttctaattatgagtagctaatt |
5827145 |
T |
|
| Q |
241 |
tccttgt |
247 |
Q |
| |
|
||||||| |
|
|
| T |
5827144 |
tccttgt |
5827138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 112 - 274
Target Start/End: Complemental strand, 23314017 - 23313856
Alignment:
| Q |
112 |
agctacaaca-gcaacacgagagatagaagaaggacttctatgataaaagaaaacttcacgagcgtaacatctcta-tttgtaatttcttttatgcatgt |
209 |
Q |
| |
|
|||||||||| ||||||| ||||||||||| ||| |||||||| ||||||||| | ||| || |||||||| ||||||||||||||||| ||||| |
|
|
| T |
23314017 |
agctacaacatgcaacacaagagatagaag---gacatctatgattgcagaaaacttaaggagtgtgacatctcttgtttgtaatttcttttat-catgt |
23313922 |
T |
|
| Q |
210 |
tgtttaattctctaattatgagtagctaa-tttccttgtggttgagacctaaaagaatctgatgta |
274 |
Q |
| |
|
|||||| ||| |||| |||||||||||| ||||| ||||||||||| || | ||||| |||||| |
|
|
| T |
23313921 |
tgtttatttcaataatcatgagtagctaattttccaagtggttgagacttagatgaatccgatgta |
23313856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 36843862 - 36843819
Alignment:
| Q |
1 |
caatgaatgatataaaagtcacaacacagaggaggaaattcatt |
44 |
Q |
| |
|
|||||||||||||||||||||||||| | ||||||||||||||| |
|
|
| T |
36843862 |
caatgaatgatataaaagtcacaacataaaggaggaaattcatt |
36843819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 160; Significance: 3e-85; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 46 - 241
Target Start/End: Original strand, 17669903 - 17670097
Alignment:
| Q |
46 |
acgcttgggtacagtaacctaaaaggagcagaatcacgttttgggattaggattattttgggaaccagctacaacagcaacacgagagatagaagaagga |
145 |
Q |
| |
|
|||||| ||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
17669903 |
acgctttggtacag-aaccaaaaaggagcagaatcacgttttgggattaggattattttgggaaccagctacagcagcaacacgagagatagaagaagga |
17670001 |
T |
|
| Q |
146 |
cttctatgataaaagaaaacttcacgagcgtaacatctctatttgtaatttcttttatgcatgttgtttaattctctaattatgagtagctaattt |
241 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| |||||||||||||||||||||| |
|
|
| T |
17670002 |
cttccatgataaaagaaaacttcacgagcgtaacatctctgtttgtaatttcttttattcatgttgtttaattttctaattatgagtagctaattt |
17670097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 127; Significance: 1e-65; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 136 - 282
Target Start/End: Complemental strand, 12984180 - 12984034
Alignment:
| Q |
136 |
agaagaaggacttctatgataaaagaaaacttcacgagcgtaacatctctatttgtaatttcttttatgcatgttgtttaattctctaattatgagtagc |
235 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
12984180 |
agaagaaggacttctatgataaaagaaaacttcacgagcgtaacatctctatttgtaatttcttttattcatgttgtttaattctctaattatgagtagc |
12984081 |
T |
|
| Q |
236 |
taatttccttgtggttgagacctaaaagaatctgatgtagttctatg |
282 |
Q |
| |
|
||||||| |||||||||||||||| | ||||||||||||| |||||| |
|
|
| T |
12984080 |
taatttctttgtggttgagacctagatgaatctgatgtagctctatg |
12984034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 46 - 153
Target Start/End: Complemental strand, 12986702 - 12986595
Alignment:
| Q |
46 |
acgcttgggtacagtaacctaaaaggagcagaatcacgttttgggattaggattattttgggaaccagctacaacagcaacacgagagatagaagaagga |
145 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
12986702 |
acgctttggtacagtaacctaaaaggagcagaatcacgttttgggattaggattattttgggaaccagctacagcagcaacacgagagatagaagaagga |
12986603 |
T |
|
| Q |
146 |
cttctatg |
153 |
Q |
| |
|
|| ||||| |
|
|
| T |
12986602 |
ctgctatg |
12986595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 187 - 274
Target Start/End: Original strand, 16883181 - 16883267
Alignment:
| Q |
187 |
tttgtaatttcttttatgcatgttgtttaattctctaattatgagtagctaa-tttccttgtggttgagacctaaaagaatctgatgta |
274 |
Q |
| |
|
||||||||||||||||| |||||||||||| ||| |||||||| |||||||| ||||| | |||| |||| |||| |||||||||||| |
|
|
| T |
16883181 |
tttgtaatttcttttat-catgttgtttaa-tctataattatgggtagctaattttccaaggggttaagacttaaatgaatctgatgta |
16883267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 226 - 274
Target Start/End: Complemental strand, 7770103 - 7770055
Alignment:
| Q |
226 |
tatgagtagctaatttccttgtggttgagacctaaaagaatctgatgta |
274 |
Q |
| |
|
|||||||| ||||| |||||||||||||||| || | |||||||||||| |
|
|
| T |
7770103 |
tatgagtaactaatctccttgtggttgagacttagatgaatctgatgta |
7770055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0382 (Bit Score: 107; Significance: 1e-53; HSPs: 1)
Name: scaffold0382
Description:
Target: scaffold0382; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 66 - 180
Target Start/End: Original strand, 16775 - 16889
Alignment:
| Q |
66 |
aaaaggagcagaatcacgttttgggattaggattattttgggaaccagctacaacagcaacacgagagatagaagaaggacttctatgataaaagaaaac |
165 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
16775 |
aaaaggagcagaatcacgttttgggattaggattattttgggaaccagctacagcagcaacacgagagatagaagaaggacttccatgataaaagaaaac |
16874 |
T |
|
| Q |
166 |
ttcacgagcgtaaca |
180 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
16875 |
ttcacgagcgtaaca |
16889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0567 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0567
Description:
Target: scaffold0567; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 139 - 274
Target Start/End: Complemental strand, 6600 - 6464
Alignment:
| Q |
139 |
agaaggacttctatgataaaagaaaacttcacgagcgtaacatctcta-tttgtaatttcttttatgcatgttgtttaattctctaattatgagtagcta |
237 |
Q |
| |
|
|||||||| |||||||| ||||||||||| |||||| |||||||| ||||||||||||||||| |||||||||||||||| |||||||||||||||| |
|
|
| T |
6600 |
agaaggacatctatgattgcagaaaacttcaggagcgtgacatctcttgtttgtaatttcttttat-catgttgtttaattctataattatgagtagcta |
6502 |
T |
|
| Q |
238 |
a-tttccttgtggttgagacctaaaagaatctgatgta |
274 |
Q |
| |
|
| ||||| |||||||||| || | |||||||||||| |
|
|
| T |
6501 |
attttccaagtggttgagatttagatgaatctgatgta |
6464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 112 - 274
Target Start/End: Complemental strand, 41779486 - 41779321
Alignment:
| Q |
112 |
agctacaaca-gcaacacgagagataga-agaaggacttctatgataaaagaaaacttcacgagcgtaacatctcta-tttgtaatttcttttatgcatg |
208 |
Q |
| |
|
|||||||||| ||||||| | ||||||| || ||||| |||||||| ||||||||||| |||||| |||||||| ||||||||||||||||| |||| |
|
|
| T |
41779486 |
agctacaacatgcaacacaatagatagatagtaggacatctatgattgcagaaaacttcaggagcgtgacatctctcgtttgtaatttcttttat-catg |
41779388 |
T |
|
| Q |
209 |
ttgtttaattctctaattatgagtagctaa-tttccttgtggttgagacctaaaagaatctgatgta |
274 |
Q |
| |
|
|||||||||||| |||| |||||| ||||| ||| | ||||||||||| || | |||||||||||| |
|
|
| T |
41779387 |
ttgtttaattctataatcatgagttgctaatttttcaagtggttgagacttagatgaatctgatgta |
41779321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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