View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14681_low_16 (Length: 263)

Name: NF14681_low_16
Description: NF14681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14681_low_16
NF14681_low_16
[»] chr6 (1 HSPs)
chr6 (20-248)||(8159207-8159435)
[»] chr3 (1 HSPs)
chr3 (22-212)||(4084080-4084280)
[»] chr4 (2 HSPs)
chr4 (20-129)||(18701668-18701774)
chr4 (129-162)||(18701618-18701651)
[»] chr8 (7 HSPs)
chr8 (20-212)||(44301308-44301516)
chr8 (20-120)||(43896073-43896170)
chr8 (66-212)||(44312207-44312368)
chr8 (20-126)||(44306520-44306624)
chr8 (215-250)||(44312137-44312172)
chr8 (215-249)||(43895856-43895890)
chr8 (218-247)||(44306284-44306313)
[»] chr5 (1 HSPs)
chr5 (43-112)||(35856948-35857017)


Alignment Details
Target: chr6 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 20 - 248
Target Start/End: Original strand, 8159207 - 8159435
Alignment:
Q  20 tgttagatatataatgacttctgctgccgatgttcctgcttattcggtctcaaaagattgtggagagaaattttcaaatggtgtgaattgattcattcta 119  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8159207 tgttagatatataatgacttctgctgctgatgttcctgcttattcggtctcaaaagattgtggagagaaattttcaaatggtgtgaattgattcattcta 8159306  T
Q  120 gagaaataattggtttggtttattagctttgcaatggtttgtttcttatttataacttattttttatggtgaatctgttgcttaattattgatactgtgt 219  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  8159307 gagaaataattggtttggtttattagctttgcaatggtttgtttcttatttataacttattttttatgctgaatctgttgcttaattattgatactgtgt 8159406  T
Q  220 tctgcatttaacacttgatcctatctctg 248  Q
    |||||||||||||||||||||||||||||    
T  8159407 tctgcatttaacacttgatcctatctctg 8159435  T

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Target: chr3 (Bit Score: 94; Significance: 6e-46; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 22 - 212
Target Start/End: Complemental strand, 4084280 - 4084080
Alignment:
Q  22 ttagatatataatgacttctgctgccgatgttcctgcttattcggtctcaaaagattgtggagagaaattttcaaatggtgtgaattgattcattctaga 121  Q
    ||||||||| ||||||||||||   ||||||||||||||||||||||||||| ||||  ||||||||||||||||||||||||||| ||||||||| |||    
T  4084280 ttagatatacaatgacttctgc---cgatgttcctgcttattcggtctcaaaggattcaggagagaaattttcaaatggtgtgaatggattcattccaga 4084184  T
Q  122 gaaat-------------aattggtttggtttattagctttgcaatggtttgtttcttatttataacttattttttatggtgaatctgttgcttaattat 208  Q
    |||||             | ||||||||| || |||||||| | |||||||||| |||||||||||||||||||||||||||||| ||||||||||||||    
T  4084183 gaaatgatcctacttaccagttggtttggcttgttagctttactatggtttgttgcttatttataacttattttttatggtgaatttgttgcttaattat 4084084  T
Q  209 tgat 212  Q
    ||||    
T  4084083 tgat 4084080  T

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Target: chr4 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 20 - 129
Target Start/End: Complemental strand, 18701774 - 18701668
Alignment:
Q  20 tgttagatatataatgacttctgctgccgatgttcctgcttattcggtctcaaaagattgtggagagaaattttcaaatggtgtgaattgattcattcta 119  Q
    ||||||||||| ||||||||||||||   ||||||||||||||||||||||||||||||  ||  | | |||||||||||||||||||||||||||||||    
T  18701774 tgttagatatacaatgacttctgctg---atgttcctgcttattcggtctcaaaagattccgggcatacattttcaaatggtgtgaattgattcattcta 18701678  T
Q  120 gagaaataat 129  Q
    ||||||||||    
T  18701677 gagaaataat 18701668  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 129 - 162
Target Start/End: Complemental strand, 18701651 - 18701618
Alignment:
Q  129 ttggtttggtttattagctttgcaatggtttgtt 162  Q
    ||||||||||||||||||||||||||||||||||    
T  18701651 ttggtttggtttattagctttgcaatggtttgtt 18701618  T

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Target: chr8 (Bit Score: 67; Significance: 7e-30; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 20 - 212
Target Start/End: Complemental strand, 44301516 - 44301308
Alignment:
Q  20 tgttagatatataatgacttctgctgccgatgttcctgcttattcggtctcaaaagattgtggagagaaattttcaaatggtgtgaattgattc-----a 114  Q
    ||||||||||| |||| |||||||   |||||||||| |||||||||| |||||||||| ||||||||||||||||||||||||||||||||||     |    
T  44301516 tgttagatatacaatgtcttctgc---cgatgttcctacttattcggtgtcaaaagattctggagagaaattttcaaatggtgtgaattgattcattcca 44301420  T
Q  115 ttctagagaaat--------------aattggtttggtttattagctttgcaatggtttgtttcttatttataacttattttttatggtgaatctgttgc 200  Q
    ||| || |||||              | || |||||| || |||||||||| ||| |||||| |||||||||||||||||||||||||| |||||| |||    
T  44301419 ttccagtgaaatgatcctacttacccagtttgtttggcttgttagctttgctatgttttgttgcttatttataacttattttttatggtaaatctgctgc 44301320  T
Q  201 ttaattattgat 212  Q
    ||||||||||||    
T  44301319 ttaattattgat 44301308  T

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Target: chr8; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 20 - 120
Target Start/End: Complemental strand, 43896170 - 43896073
Alignment:
Q  20 tgttagatatataatgacttctgctgccgatgttcctgcttattcggtctcaaaagattgtggagagaaattttcaaatggtgtgaattgattcattcta 119  Q
    ||||||||||| ||||||||||||   ||||||||||| ||||||  ||||| |||||| ||||||||||||||||||||||||| || |||||||||||    
T  43896170 tgttagatatacaatgacttctgc---cgatgttcctgattattctatctcataagattctggagagaaattttcaaatggtgtggatggattcattcta 43896074  T

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Target: chr8; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 66 - 212
Target Start/End: Complemental strand, 44312368 - 44312207
Alignment:
Q  66 gtctcaaaagattgtggagagaaattttcaaatggtgtgaattgattcattctagagaaataat--------------tggtttggtttattagctttgc 151  Q
    |||||||||| || |||||||||||||||||||||||||||| ||||||||| |||||| | ||              |||||||| || ||| || |||    
T  44312368 gtctcaaaagtttctggagagaaattttcaaatggtgtgaatggattcattcaagagaattgatcctacttcgccagttggtttggcttgttaactatgc 44312269  T
Q  152 aatggtttgtttcttatttataacttatttttt-atggtgaatctgttgcttaattattgat 212  Q
      ||||||||| ||||||||||||||||||||| ||||||||| ||||||||||||||||||    
T  44312268 tttggtttgttgcttatttataacttatttttttatggtgaatttgttgcttaattattgat 44312207  T

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Target: chr8; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 20 - 126
Target Start/End: Complemental strand, 44306624 - 44306520
Alignment:
Q  20 tgttagatatataatgacttctgctgccgatgttcctgcttattcggtctcaaaagattgtggagagaaatttt-caaatggtgtgaattgattcattct 118  Q
    ||||||||||| ||||||||||||   |||||||||| ||||||| |||||| |||||| ||||||||  |||| |||||||||||||| ||||||||||    
T  44306624 tgttagatatacaatgacttctgc---cgatgttcctacttattctgtctcataagattctggagagagttttttcaaatggtgtgaatggattcattct 44306528  T
Q  119 agagaaat 126  Q
    || |||||    
T  44306527 agggaaat 44306520  T

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Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 215 - 250
Target Start/End: Complemental strand, 44312172 - 44312137
Alignment:
Q  215 tgtgttctgcatttaacacttgatcctatctctgct 250  Q
    |||||||||||||||||| |||||||||||||||||    
T  44312172 tgtgttctgcatttaacagttgatcctatctctgct 44312137  T

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Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 215 - 249
Target Start/End: Complemental strand, 43895890 - 43895856
Alignment:
Q  215 tgtgttctgcatttaacacttgatcctatctctgc 249  Q
    ||||||||||||||||||| |||||||||||||||    
T  43895890 tgtgttctgcatttaacacctgatcctatctctgc 43895856  T

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Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 218 - 247
Target Start/End: Complemental strand, 44306313 - 44306284
Alignment:
Q  218 gttctgcatttaacacttgatcctatctct 247  Q
    ||||||||||||||||||||||||||||||    
T  44306313 gttctgcatttaacacttgatcctatctct 44306284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 43 - 112
Target Start/End: Original strand, 35856948 - 35857017
Alignment:
Q  43 ctgccgatgttcctgcttattcggtctcaaaagattgtggagagaaattttcaaatggtgtgaattgatt 112  Q
    ||||| |||||| || |||||||||||||||||||| | | ||| ||| |||||||| ||||||| ||||    
T  35856948 ctgccaatgttcttgattattcggtctcaaaagattctagcgagcaatcttcaaatgttgtgaatggatt 35857017  T

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