View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14681_low_19 (Length: 252)
Name: NF14681_low_19
Description: NF14681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14681_low_19 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 10 - 252
Target Start/End: Original strand, 55696758 - 55697000
Alignment:
| Q |
10 |
tgagatgaaggaaaacgatccccagattcatgggacttgtaaatgtggagacgggaacccaaaccacgaaagccttcaactggtaaatatttcacagacg |
109 |
Q |
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| T |
55696758 |
tgagatgaaggaagacgatcaccggattcatgggacttgtaaatgtggagacgggaacccaaaccacgaaagccttcaactggtaaatatttcacagacg |
55696857 |
T |
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| Q |
110 |
tccaaaagaaaagaagaaccttcttttcttcagctgtcattctccccactatctgccaagttttttcaaacagactgttaaaatatgaaatgtaaaaact |
209 |
Q |
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| T |
55696858 |
tccaaaagaaaagaagaaccttcttttcttcagctgtcattctccccactatctgccaagttttttcaaacagactgttaaaatatgaaatgtaaaaact |
55696957 |
T |
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| Q |
210 |
gagcagcatctcttatcaaatcttgatatataaagttgttaga |
252 |
Q |
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| T |
55696958 |
gagcagcatctcttatcaaatcttgatatataaagttgttaga |
55697000 |
T |
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Target: chr2 (Bit Score: 56; Significance: 3e-23; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 63 - 174
Target Start/End: Original strand, 9235226 - 9235337
Alignment:
| Q |
63 |
ggaacccaaaccacgaaagccttcaactggtaaatatttcacagacgtccaaaagaaaagaagaaccttcttttcttcagctgtcattctccccactatc |
162 |
Q |
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| T |
9235226 |
ggaactcaagccacggaaaccttcaactggtaaatgtttcacagatgtccaaaagaacagaagaactttcttttgctctgctgacattctcccgacgatc |
9235325 |
T |
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| Q |
163 |
tgccaagttttt |
174 |
Q |
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| T |
9235326 |
tgccaagttttt |
9235337 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 82 - 172
Target Start/End: Original strand, 9246830 - 9246920
Alignment:
| Q |
82 |
ccttcaactggtaaatatttcacagacgtccaaaagaaaagaagaaccttcttttcttcagctgtcattctccccactatctgccaagttt |
172 |
Q |
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| T |
9246830 |
ccttcaactggtaaatgtttcacagatgtccagaagaacagaagaaccttcttttgctctgctggcattctcccaacgatctgccaagttt |
9246920 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 68 - 175
Target Start/End: Original strand, 9254973 - 9255080
Alignment:
| Q |
68 |
ccaaaccacgaaagccttcaactggtaaatatttcacagacgtccaaaagaaaagaagaaccttcttttcttcagctgtcattctccccactatctgcca |
167 |
Q |
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| T |
9254973 |
ccaaaccatggaaacctttaactggtaaatgtttcacagatgtccaaaagaacagaagaaccttcctttgctctgctgacattcttccaacgatctgcca |
9255072 |
T |
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| Q |
168 |
agtttttt |
175 |
Q |
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| T |
9255073 |
agtttttt |
9255080 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 82 - 136
Target Start/End: Original strand, 9264993 - 9265047
Alignment:
| Q |
82 |
ccttcaactggtaaatatttcacagacgtccaaaagaaaagaagaaccttctttt |
136 |
Q |
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| T |
9264993 |
ccttcgactggtaaatgtttcactgatgtccaaaagaacagaagaaccttctttt |
9265047 |
T |
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