View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14681_low_22 (Length: 239)
Name: NF14681_low_22
Description: NF14681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14681_low_22 |
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Alignment Details
Target: chr3 (Bit Score: 191; Significance: 1e-104; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 18 - 228
Target Start/End: Original strand, 1575578 - 1575788
Alignment:
| Q |
18 |
aatagagaatgtgagaaataaagtatatttcatttattgtttggtataagagaacggaagtgttgtgcagcacgagaccaaaggcaacgagtggaaatca |
117 |
Q |
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| T |
1575578 |
aatagagaatgtgagaaataaagtatatttcatttattgtttggtataagagaacggaagtgttgtacagcacgagatcaaaggtaacgagtggaaatca |
1575677 |
T |
|
| Q |
118 |
tgtgatggagagttaaacatgggagagggaattcaattggttacaggaaggaaggcataaataaaaattcaagggtggagattggttcgtcgcttctcgt |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
1575678 |
tgtgatggagagttaaacatgggagagggaattcaattggttacaggaaggaaggcataaataaaaattcaagggtggagaatggttcgtcgcttctcgt |
1575777 |
T |
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| Q |
218 |
gtgtgtatatt |
228 |
Q |
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|||||| |||| |
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| T |
1575778 |
gtgtgtgtatt |
1575788 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 71
Target Start/End: Complemental strand, 40687053 - 40687008
Alignment:
| Q |
26 |
atgtgagaaataaagtatatttcatttattgtttggtataagagaa |
71 |
Q |
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| T |
40687053 |
atgtgagaaatatagtagatttgatgtattgtttggtataagagaa |
40687008 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 2e-17; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 126 - 228
Target Start/End: Complemental strand, 2190793 - 2190699
Alignment:
| Q |
126 |
agagttaaacatgggagagggaattcaattggttacaggaaggaaggcataaataaaaattcaagggtggagattggttcgtcgcttctcgtgtgtgtat |
225 |
Q |
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| T |
2190793 |
agagtaaaacatgggagagagaattcaattggttacaggaagg--------aataaaaatccaagggttgtgaatggttcgtcgcttctcgtgcgtgtat |
2190702 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 71
Target Start/End: Complemental strand, 26647810 - 26647764
Alignment:
| Q |
25 |
aatgtgagaaataaagtatatttcatttattgtttggtataagagaa |
71 |
Q |
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||||||||||||||||||||||| || ||||||||||| ||||||| |
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| T |
26647810 |
aatgtgagaaataaagtatatttgatggattgtttggtagaagagaa |
26647764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 71
Target Start/End: Complemental strand, 26919395 - 26919349
Alignment:
| Q |
25 |
aatgtgagaaataaagtatatttcatttattgtttggtataagagaa |
71 |
Q |
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||||||||||||||||||||||| || ||||||||||| ||||||| |
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| T |
26919395 |
aatgtgagaaataaagtatatttgatggattgtttggtagaagagaa |
26919349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 71
Target Start/End: Original strand, 10365011 - 10365056
Alignment:
| Q |
26 |
atgtgagaaataaagtatatttcatttattgtttggtataagagaa |
71 |
Q |
| |
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||||||||||||||||| |||| || ||||||||||||||||||| |
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| T |
10365011 |
atgtgagaaataaagtagatttgatggattgtttggtataagagaa |
10365056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 70
Target Start/End: Complemental strand, 40786386 - 40786342
Alignment:
| Q |
26 |
atgtgagaaataaagtatatttcatttattgtttggtataagaga |
70 |
Q |
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|||||||||||| |||| |||| || ||||||||||||||||||| |
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| T |
40786386 |
atgtgagaaatagagtagatttgatgtattgtttggtataagaga |
40786342 |
T |
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