View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14681_low_5 (Length: 426)
Name: NF14681_low_5
Description: NF14681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14681_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 367; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 14 - 412
Target Start/End: Original strand, 1239798 - 1240196
Alignment:
| Q |
14 |
tgaagaatgttttctctgacttagaagccaaaactagcaatagagaacccaattgactaacactcattgtaaccacacaacaaataataaagaatctata |
113 |
Q |
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| T |
1239798 |
tgaagaatgttttctctgacttagaagccaaaactagcaatagagaacccaattgactaacactcattgtaaccacacaacaaattataaagaatctata |
1239897 |
T |
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| Q |
114 |
cctatgacttataatccataattgtcttctaatcctcacatgttccttaaatataacacctgcttcagaaccacacccttcaaaaagcttatgaacacct |
213 |
Q |
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| T |
1239898 |
cctatgacttataatccataattgtcttctaattctcacatgttctttaaatataacacccgcttctgaaccacacccttcaaaaagtttgtgaacacct |
1239997 |
T |
|
| Q |
214 |
tcaaatcttaatatttgaagctgacaagttagtttaaaaatcacacataccaacaagtacacaccagttctgtacaaccatgaaagtaacataaatacaa |
313 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1239998 |
tcaaatcttaatatttggagctgacaagttagtttaaaaatcacacataccaacaagtacacaccagttctgtacaaccatgaaagtaacataaatacaa |
1240097 |
T |
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| Q |
314 |
acacaattgagtgtagtggaaatccagcactaaggtttggtgctgaaatttttactgctgagaagaatatgattttgtgagcaagttctacaaagaaag |
412 |
Q |
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| T |
1240098 |
acacaattgagtgtagtggaaatccagcactaaggtttggtgctgaaatttttactgctgagaagaatatgattttgtgagcaagttctacaaagaaag |
1240196 |
T |
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