View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14682_high_1 (Length: 700)
Name: NF14682_high_1
Description: NF14682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14682_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 316; Significance: 1e-178; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 19 - 410
Target Start/End: Complemental strand, 26269613 - 26269222
Alignment:
| Q |
19 |
caatcaccttaatttctctccttacaagttcttgcatcaaaccacctttcctgctaagaacaacagctgaaacatttgctccacaactcatcaattcagt |
118 |
Q |
| |
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||||||||||||||| |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |
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| T |
26269613 |
caatcaccttaatttgtctcctaacaagctcttgcatcaaaccacctttcctgctaagaacaacagctgaaacatttgctccacaactcaaaagttcagt |
26269514 |
T |
|
| Q |
119 |
tgccaattccatcattgaaagtggtgctccagtcatagaaagttcatgaaatatcaacacaaaactctttgacataacaagttttgcaaattcacttttc |
218 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| || |||||||||||||||| |
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| T |
26269513 |
tgccaactccatcattgaaagtggtgctccagtcatagaaagctcatgaaatatcaatacaaaactctttgacataacaacttgtgcaaattcacttttc |
26269414 |
T |
|
| Q |
219 |
ttgtcacattttccacaacccttctcattagtactcaatttcaagattttgtcctccattgaatcaaatggaccaacaagaggaatttctaactcctttt |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
26269413 |
ttgtcacattttccacaacccttctcattagtactcaatttcaagattttgtcctccattgaaccaaatggaccaacaagaggaatttctaactcctttt |
26269314 |
T |
|
| Q |
319 |
cctctatattaccaaaatttccatcaaatttcaattttcttttatgcttaccatgtaccttacttctcaaaaaccttctacccttccttttc |
410 |
Q |
| |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| | ||||||| | |||||||| |
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| T |
26269313 |
cctctatattaccaaaatttccatcaactttcaattttcttttatgcttaccatgtaacttacttctcaatgatcttctactcctccttttc |
26269222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 19 - 321
Target Start/End: Original strand, 3111497 - 3111799
Alignment:
| Q |
19 |
caatcaccttaatttctctccttacaagttcttgcatcaaaccacctttcctgctaagaacaacagctgaaacatttgctccacaactcatcaattcagt |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3111497 |
caatcaccttaatttctctccttacaagttcttgcatcaaaccacctttcctgctaagaacaacagctgaaacatttgctccacaactcatcaattcagt |
3111596 |
T |
|
| Q |
119 |
tgccaattccatcattgaaagtggtgctccagtcatagaaagttcatgaaatatcaacacaaaactctttgacataacaagttttgcaaattcacttttc |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3111597 |
tgccaattccatcattgaaagtggtgctccagtcatagaaagttcatgaaatatcaacacaaaactctttgacataacaagttttgcaaattcacttttc |
3111696 |
T |
|
| Q |
219 |
ttgtcacattttccacaacccttctcattagtactcaatttcaagattttgtcctccattgaatcaaatggaccaacaagaggaatttctaactcctttt |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3111697 |
ttgtcacattttccacaacccttctcattagtactcaatttcaagattttgtcctccattgaatcaaatggaccaacaagaggaatttctaactcctttt |
3111796 |
T |
|
| Q |
319 |
cct |
321 |
Q |
| |
|
||| |
|
|
| T |
3111797 |
cct |
3111799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 365 - 697
Target Start/End: Original strand, 3111798 - 3112130
Alignment:
| Q |
365 |
cttaccatgtaccttacttctcaaaaaccttctacccttccttttccctgaactgatattaccattttctcttttcttggccaatacaacatctacgaga |
464 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3111798 |
cttaccatgtaccttacttctcaaaaaccttctactcttccttttccttgaactgatattaccattttctcttttcttggccaatacaacatctacgaga |
3111897 |
T |
|
| Q |
465 |
ttattcacaccaactttttcattatcaacaaataaagaacnnnnnnncacaactgaatcttgatgatttttaagatgaaaatcaaacccttttaattctt |
564 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3111898 |
ttattcacaccaactttttcattatcaacaaataaagaacttttttgcacaactgaatcttgatgatttttaagatgaaaatcaaacccttttaattctt |
3111997 |
T |
|
| Q |
565 |
gttctttctcatattgatcccacttagattgaacaaaaaacccaagataagcccaaagagtaaccaaaatcagacacaaaactaaccggttgcttccaat |
664 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3111998 |
gttctttctcatattgatcccacttagattgaacaaaaaacccaagataagcccaaagagtaaccaaaatcagacacaaaactaaccggttgcttccaat |
3112097 |
T |
|
| Q |
665 |
ccaagaaaacgatgcattactactacctatgct |
697 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| |
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|
| T |
3112098 |
ccaagaaaacgatgcattactactacctttgct |
3112130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 435 - 697
Target Start/End: Complemental strand, 26269227 - 26268965
Alignment:
| Q |
435 |
cttttcttggccaatacaacatctacgagattattcacaccaactttttcattatcaacaaataaagaacnnnnnnncacaactgaatcttgatgatttt |
534 |
Q |
| |
|
||||||||||||||||||| ||| | |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| |
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|
| T |
26269227 |
cttttcttggccaatacaatatccaggagattattcacaccaactttttcattatcaacaaataaagaactttttttgacaaccgaatcttgatgatttt |
26269128 |
T |
|
| Q |
535 |
taagatgaaaatcaaacccttttaattcttgttctttctcatattgatcccacttagattgaacaaaaaacccaagataagcccaaagagtaaccaaaat |
634 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |||||||||| |
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|
| T |
26269127 |
taagatgaaaatcaaacccttttagttcttgttctttctcataatgatcccacttagattgaacaaaaaaaccaagataagcccaaagggtaaccaaaac |
26269028 |
T |
|
| Q |
635 |
cagacacaaaactaaccggttgcttccaatccaagaaaacgatgcattactactacctatgct |
697 |
Q |
| |
|
||| ||||| ||||| |||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
26269027 |
cagccacaatactaatcggttgcttccaatccaagaaaacgatgcattactactacctttgct |
26268965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 53 - 175
Target Start/End: Complemental strand, 44061684 - 44061562
Alignment:
| Q |
53 |
catcaaaccacctttcctgctaagaacaacagctgaaacatttgctccacaactcatcaattcagttgccaattccatcattgaaagtggtgctccagtc |
152 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| |||| | | || ||||| |||| | || ||||||||||||| |||||| ||||| ||||| ||| |
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|
| T |
44061684 |
catcaaaccacctttcctgctaagtgcaacagccgaaatagtggcaccacagctcaaaagctctgttgccaattccaacattgagagtggagctccggtc |
44061585 |
T |
|
| Q |
153 |
atagaaagttcatgaaatatcaa |
175 |
Q |
| |
|
|| ||||| || || |||||||| |
|
|
| T |
44061584 |
atggaaagctcgtggaatatcaa |
44061562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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