View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14682_high_12 (Length: 338)
Name: NF14682_high_12
Description: NF14682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14682_high_12 |
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Alignment Details
Target: chr7 (Bit Score: 282; Significance: 1e-158; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 17 - 324
Target Start/End: Original strand, 35742449 - 35742753
Alignment:
| Q |
17 |
aataagactctcgaatgcaccgggctcgaatctaacaaacaataagtgaagttcaagcaatctttcaaacccagagaaatcagatggaattgacaagtca |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
35742449 |
aataagactctcgaatgcaccgggctcgaatctaacaaacaataagtgaagttcaagcaatctttcaaacccagagaaatcaggtggaattgacaagtca |
35742548 |
T |
|
| Q |
117 |
aatcctaaaaatttagagtacgtcaattccttacaagggaggaggtcgacaatatatagcatttgatcgggatgtgtttcgtggttcacaagctcgagat |
216 |
Q |
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||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35742549 |
aatcctaaaaacttagagtacgtcaattccttacaagggag---gtcgacaatatatagcatttgatcgggatgtgtttcgtggttcacaagctcgagat |
35742645 |
T |
|
| Q |
217 |
gtttaatattcctctctgaccaaatcggaatccacttatcgaggtgttcaattgtgatctcaaatttgtagtcattagatatgaaaagaccaaacttatc |
316 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35742646 |
gtttaatattcctctctgacaaaatcggaatccacttatcgaggtgttcaattgtgatctcaaatttgtagtcattagatatgaaaagaccaaacttatc |
35742745 |
T |
|
| Q |
317 |
tatcggcc |
324 |
Q |
| |
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|||||||| |
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| T |
35742746 |
tatcggcc |
35742753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 17 - 322
Target Start/End: Original strand, 35748817 - 35749116
Alignment:
| Q |
17 |
aataagactctcgaatgcaccgggctcgaatctaacaaacaataagtgaagttcaagcaatctttcaaacccagagaaatcagatggaattgacaagtca |
116 |
Q |
| |
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|||||||| ||| | |||||||| ||||||| ||||| |||||||||| | ||||||||||| ||| || |||||||| |||||||||||||| | |
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| T |
35748817 |
aataagaccctcaagtgcaccggactcgaatgtaacattagataagtgaagattaagcaatcttttaaagcctcagaaatcatgtggaattgacaagtta |
35748916 |
T |
|
| Q |
117 |
aatcctaaaaatttagagtacgtcaattccttacaagggaggaggtcgacaatatatagcatttgatcgggatgtgtttcgtggttcacaagctcgagat |
216 |
Q |
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||||| ||||||| |||| ||||| |||||||||| ||||| || ||||| ||||||||||| ||||||| ||| ||||| ||||||||||| |
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| T |
35748917 |
aatccggaaaatttgaagtaagtcaactccttacaagcgagga------cagtatatggcatttgatcgacatgtgttccgtagttcaaaagctcgagat |
35749010 |
T |
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| Q |
217 |
gtttaatattcctctctgaccaaatcggaatccacttatcgaggtgttcaattgtgatctcaaatttgtagtcattagatatgaaaagaccaaacttatc |
316 |
Q |
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||||||||| |||| ||| | | |||||||||| || |||| ||||||| |||||| || |||||||||| || |||||||||| |||||||| |
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| T |
35749011 |
gtttaatatccctcctagacaagaacggaatccacgtactgaggaattcaattatgatcttgaaattgtagtcataaggtatgaaaagatgaaacttatg |
35749110 |
T |
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