View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14682_high_14 (Length: 324)
Name: NF14682_high_14
Description: NF14682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14682_high_14 |
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Alignment Details
Target: chr3 (Bit Score: 288; Significance: 1e-161; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 9 - 304
Target Start/End: Original strand, 28833552 - 28833847
Alignment:
| Q |
9 |
aatataacacgaccatttgtttatgtagctcggctaattgtgtatatctctgtgatagtatctgcgatagtatatcagctatagtttcgtatattatttg |
108 |
Q |
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| T |
28833552 |
aatataacacgaccatttgtttatgtagctgggctaattgtgtatatctctgtgatagtatctgcgatagtatatcagctatagtttcgtatattatttg |
28833651 |
T |
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| Q |
109 |
agtgaattaggatttacggcattacaagccatatatatagaattattgtccatatatgtgagttatactcaacaaattccataaatctttgagttagtgt |
208 |
Q |
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| T |
28833652 |
agtgaattaggatttacggcattacaagccatatatatagaattattgtccatatatgtgagttatactcaacaaattccataaatctttgagttagtgt |
28833751 |
T |
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| Q |
209 |
caactgagatattgaacactttgaaaatgtgaatagattcgagactgaaatattctacaatcaaacaacacaacctgggaatggtatattatgtgg |
304 |
Q |
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| T |
28833752 |
caactgagatattgaacactttgaaaatgtgaatagattcgagactgaaatattctacaatcaaacaacacaacctgggaatggtatgttatgtgg |
28833847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 225 - 308
Target Start/End: Original strand, 28824889 - 28824972
Alignment:
| Q |
225 |
cactttgaaaatgtgaatagattcgagactgaaatattctacaatcaaacaacacaacctgggaatggtatattatgtgggaac |
308 |
Q |
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| T |
28824889 |
cactttgaaaatgtgataaggtacgagagtgaaagattctacgatcaaacaactcaacaagggaatggtgtaatatgtgggaac |
28824972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 93 - 148
Target Start/End: Original strand, 5948945 - 5949000
Alignment:
| Q |
93 |
tttcgtatattatttgagtgaattaggatttacggcattacaagccatatatatag |
148 |
Q |
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| T |
5948945 |
tttcgtatattacttgagtgaattagtgtttacagtgttacaagccatatatatag |
5949000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 87 - 160
Target Start/End: Complemental strand, 28820798 - 28820725
Alignment:
| Q |
87 |
ctatagtttcgtatattatttgagtgaattaggatttacggcattacaagccatatatatagaattattgtcca |
160 |
Q |
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| T |
28820798 |
ctatagttccatatattacttgagtgaattagagtttacagtgttacaaaccatatatatagtattatggtcca |
28820725 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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