View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14682_high_18 (Length: 308)

Name: NF14682_high_18
Description: NF14682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14682_high_18
NF14682_high_18
[»] chr4 (4 HSPs)
chr4 (207-276)||(1868933-1869002)
chr4 (7-101)||(1858963-1859060)
chr4 (247-286)||(8614181-8614220)
chr4 (253-292)||(29577468-29577510)
[»] chr2 (6 HSPs)
chr2 (249-286)||(43205100-43205137)
chr2 (255-290)||(35008124-35008159)
chr2 (252-290)||(1096366-1096404)
chr2 (244-275)||(42251972-42252003)
chr2 (254-282)||(9377768-9377796)
chr2 (253-281)||(37064080-37064108)
[»] chr3 (4 HSPs)
chr3 (254-291)||(21481776-21481813)
chr3 (256-291)||(44826967-44827002)
chr3 (248-276)||(349464-349492)
chr3 (247-279)||(27276750-27276782)
[»] chr1 (2 HSPs)
chr1 (256-290)||(48689570-48689604)
chr1 (252-292)||(1100213-1100256)
[»] chr7 (2 HSPs)
chr7 (244-276)||(4971278-4971310)
chr7 (253-292)||(41538479-41538521)


Alignment Details
Target: chr4 (Bit Score: 70; Significance: 1e-31; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 207 - 276
Target Start/End: Complemental strand, 1869002 - 1868933
Alignment:
Q  207 aactaacggggtgtttggtttgcatgtaattaaatcctatttataataagagaaatgatatttgtacaac 276  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1869002 aactaacggggtgtttggtttgcatgtaattaaatcctatttataataagagaaatgatatttgtacaac 1868933  T

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Target: chr4; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 7 - 101
Target Start/End: Complemental strand, 1859060 - 1858963
Alignment:
Q  7 agtattcgaaggtttataaatattcgaagttcaaatagctaa---cacatcaggaacatgcaagagaagttttaaaaaagaacaattatgtatgggaa 101  Q
    |||| |||||||||||||||||||  ||||||||||| ||||   ||||| ||||||||||||||||||||||||||||| |||||||||| ||||||    
T  1859060 agtaatcgaaggtttataaatatttaaagttcaaataactaattacacataaggaacatgcaagagaagttttaaaaaaggacaattatgtttgggaa 1858963  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 247 - 286
Target Start/End: Original strand, 8614181 - 8614220
Alignment:
Q  247 ttataataagagaaatgatatttgtacaacttttgtacaa 286  Q
    |||| ||| |||||||||||||||||||||||||||||||    
T  8614181 ttattatatgagaaatgatatttgtacaacttttgtacaa 8614220  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 253 - 292
Target Start/End: Complemental strand, 29577510 - 29577468
Alignment:
Q  253 taagagaaatgatatttgtacaac---ttttgtacaatttttg 292  Q
    ||||||||||||||||||||||||   ||||||||||||||||    
T  29577510 taagagaaatgatatttgtacaactatttttgtacaatttttg 29577468  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 249 - 286
Target Start/End: Original strand, 43205100 - 43205137
Alignment:
Q  249 ataataagagaaatgatatttgtacaacttttgtacaa 286  Q
    ||||||||||||||||||||||||||||||||||||||    
T  43205100 ataataagagaaatgatatttgtacaacttttgtacaa 43205137  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 255 - 290
Target Start/End: Complemental strand, 35008159 - 35008124
Alignment:
Q  255 agagaaatgatatttgtacaacttttgtacaatttt 290  Q
    ||||||||||||||||||||||||||||||||||||    
T  35008159 agagaaatgatatttgtacaacttttgtacaatttt 35008124  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 252 - 290
Target Start/End: Complemental strand, 1096404 - 1096366
Alignment:
Q  252 ataagagaaatgatatttgtacaacttttgtacaatttt 290  Q
    |||||||||||||||||||||||||||||||| ||||||    
T  1096404 ataagagaaatgatatttgtacaacttttgtataatttt 1096366  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 244 - 275
Target Start/End: Complemental strand, 42252003 - 42251972
Alignment:
Q  244 tatttataataagagaaatgatatttgtacaa 275  Q
    ||||||||||||||||||||||||||||||||    
T  42252003 tatttataataagagaaatgatatttgtacaa 42251972  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 254 - 282
Target Start/End: Complemental strand, 9377796 - 9377768
Alignment:
Q  254 aagagaaatgatatttgtacaacttttgt 282  Q
    |||||||||||||||||||||||||||||    
T  9377796 aagagaaatgatatttgtacaacttttgt 9377768  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 253 - 281
Target Start/End: Original strand, 37064080 - 37064108
Alignment:
Q  253 taagagaaatgatatttgtacaacttttg 281  Q
    |||||||||||||||||||||||||||||    
T  37064080 taagagaaatgatatttgtacaacttttg 37064108  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 254 - 291
Target Start/End: Original strand, 21481776 - 21481813
Alignment:
Q  254 aagagaaatgatatttgtacaacttttgtacaattttt 291  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  21481776 aagagaaatgatatttgtacaacttttgtacaactttt 21481813  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 256 - 291
Target Start/End: Original strand, 44826967 - 44827002
Alignment:
Q  256 gagaaatgatatttgtacaacttttgtacaattttt 291  Q
    ||||||| ||||||||||||||||||||||||||||    
T  44826967 gagaaattatatttgtacaacttttgtacaattttt 44827002  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 248 - 276
Target Start/End: Complemental strand, 349492 - 349464
Alignment:
Q  248 tataataagagaaatgatatttgtacaac 276  Q
    |||||||||||||||||||||||||||||    
T  349492 tataataagagaaatgatatttgtacaac 349464  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 247 - 279
Target Start/End: Original strand, 27276750 - 27276782
Alignment:
Q  247 ttataataagagaaatgatatttgtacaacttt 279  Q
    ||||||| |||||||||||||||||||||||||    
T  27276750 ttataattagagaaatgatatttgtacaacttt 27276782  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 256 - 290
Target Start/End: Original strand, 48689570 - 48689604
Alignment:
Q  256 gagaaatgatatttgtacaacttttgtacaatttt 290  Q
    |||||||||||||||||||||||||||| ||||||    
T  48689570 gagaaatgatatttgtacaacttttgtataatttt 48689604  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 252 - 292
Target Start/End: Original strand, 1100213 - 1100256
Alignment:
Q  252 ataagagaaatgatatttgtacaac---ttttgtacaatttttg 292  Q
    |||||||||||||||||||||||||   ||||||||||||||||    
T  1100213 ataagagaaatgatatttgtacaaccatttttgtacaatttttg 1100256  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 244 - 276
Target Start/End: Original strand, 4971278 - 4971310
Alignment:
Q  244 tatttataataagagaaatgatatttgtacaac 276  Q
    |||||| ||||||||||||||||||||||||||    
T  4971278 tatttaaaataagagaaatgatatttgtacaac 4971310  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 253 - 292
Target Start/End: Original strand, 41538479 - 41538521
Alignment:
Q  253 taagagaaatgatatttgtacaac---ttttgtacaatttttg 292  Q
    ||||||||||||||||||||||||   ||||||||||||||||    
T  41538479 taagagaaatgatatttgtacaaccatttttgtacaatttttg 41538521  T

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