View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14682_high_23 (Length: 257)
Name: NF14682_high_23
Description: NF14682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14682_high_23 |
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| [»] scaffold0022 (3 HSPs) |
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Alignment Details
Target: scaffold0022 (Bit Score: 92; Significance: 9e-45; HSPs: 3)
Name: scaffold0022
Description:
Target: scaffold0022; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 36 - 139
Target Start/End: Original strand, 84038 - 84141
Alignment:
| Q |
36 |
accaaactctcctcctcaacctcaagagattgagatactctctgcattacatttgcagaacaaagcctgtaaagctttcaaagactctctgcttattgat |
135 |
Q |
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| T |
84038 |
accaaaccctcctcctcaacctcaagagattgagagactctctgcattacatttgcagaacaaagcctgcaaagctttcaaagactctctgcttattgat |
84137 |
T |
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| Q |
136 |
tccg |
139 |
Q |
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|||| |
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| T |
84138 |
tccg |
84141 |
T |
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Target: scaffold0022; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 204 - 243
Target Start/End: Original strand, 84215 - 84254
Alignment:
| Q |
204 |
tagatttaagcagtttgagaattttttcattaaagttttt |
243 |
Q |
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| T |
84215 |
tagatttaagcagtttgagaattttttcattaaagttttt |
84254 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0022; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 84015 - 84047
Alignment:
| Q |
1 |
tctcctcaaacaggctggcccacaccaaaccct |
33 |
Q |
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| T |
84015 |
tctcctcaaacaggctggcccacaccaaaccct |
84047 |
T |
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