View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14682_high_27 (Length: 248)
Name: NF14682_high_27
Description: NF14682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14682_high_27 |
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Alignment Details
Target: chr7 (Bit Score: 148; Significance: 3e-78; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 18 - 216
Target Start/End: Complemental strand, 33883804 - 33883616
Alignment:
| Q |
18 |
attttcaacaaattattaaagagactattatttatggtacaattacgagactattactaaaattgcatatattttaaatttagttatttaatacttcaat |
117 |
Q |
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| T |
33883804 |
attttcaacaaattattaaagagactattattt----------tacgagactattactaaaattgcgtatattttaaatttaattatttaatacttcaat |
33883715 |
T |
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| Q |
118 |
aagtttatgtgggttcagtcaaaaatagattgagtggttttaaaattttgaattttctacttcacatcaaattgatcaaattttctaatattttttatc |
216 |
Q |
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| T |
33883714 |
aagtttatgtgggttcagtcaaaaatagattgagtggttttaaaattttgaattttctacttcagatcaacttgatcaaattttctaatattttttatc |
33883616 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 117 - 209
Target Start/End: Complemental strand, 33877546 - 33877452
Alignment:
| Q |
117 |
taagtttatgtgggttcagtcaaaaatagattgagtggttttaaaattttgaattttctacttcac--atcaaattgatcaaattttctaatatt |
209 |
Q |
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| T |
33877546 |
taagtttgagtgggtccagtcaaaaatagattgagtggttttaaaattttcaatttcctacttcacatatcaactcaatcaaattttctaatatt |
33877452 |
T |
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