View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14682_high_3 (Length: 650)
Name: NF14682_high_3
Description: NF14682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14682_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 559; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 559; E-Value: 0
Query Start/End: Original strand, 18 - 639
Target Start/End: Original strand, 5677847 - 5678470
Alignment:
| Q |
18 |
agcagaattttgctgctagttcaaatgcttctgctccaccaggaacatcggagagttcaacaaaggacacgtccgagtcattagattctgagacgagttt |
117 |
Q |
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| T |
5677847 |
agcagaattttgctgctagttcaaatgcttctgctccaccaggaacatcggagagttcaacaaaggacacgtccgagtcattagattctgagacgagttt |
5677946 |
T |
|
| Q |
118 |
ccgaatgtatccacacttggagactaatggatactgcaacgaatttaattcatacacactgtcatataaagcttttttgcacttttaatcagtcataaaa |
217 |
Q |
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| T |
5677947 |
ccgaatgtatccacacttggagactaatggatactgcaacgaatttaattcatacacactgtcatataaagtttttttgcacttttaatcagtcataaaa |
5678046 |
T |
|
| Q |
218 |
acatatgtaacatcttgctttcaaattcaagttatatattgagacagaaagnnnnnnncatgacatgttttgtaacaaataaacattaacaattgattga |
317 |
Q |
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| T |
5678047 |
acatatgtaacatcttgctttcaaattcaagttatatattgagacagaaagaaaaaaacatgacatgttttgtaacaaataaacattaacaattgattga |
5678146 |
T |
|
| Q |
318 |
caagtgacatcttacaagattaagaaatcattactcttcacttgaatgattcaaagcaaataagtttgatatatattatatctatgcagcaaagagccac |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
5678147 |
caagtgacatcttacaagattaagaaatcattactcttcacttgaatgattcaaagcaaataagtttgatatatattatatctatgcagcaaagagtcac |
5678246 |
T |
|
| Q |
418 |
taccttatgtaaagtaaaggaagattctccaatttggacattgacatcacttggaatctcctgagaaaaaatcctataattaagcaatacaactcattgg |
517 |
Q |
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| T |
5678247 |
taccttatgtaaagtaaaggaagattcaccaatttggacattgacatcacttggaatctcctgagaaaaaatcctataattaagcaatacaactcattgg |
5678346 |
T |
|
| Q |
518 |
tttcagttactaaaatccaacaaaagttagcaaacaagaacatgcacaagaaaagtgtcaagtacatttgacatatatatacataaacat--nnnnnnnt |
615 |
Q |
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| T |
5678347 |
tttcagttactaaaatccaacaaaagttagcaaacaagaacatgcacaagaaaagtgtcaagtacatttgacatatatatacataaacataaaaaaaaat |
5678446 |
T |
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| Q |
616 |
ataccagtcacttgttcttttcat |
639 |
Q |
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| T |
5678447 |
ataccagtcacttgttcttttcat |
5678470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 20 - 77
Target Start/End: Complemental strand, 39777559 - 39777502
Alignment:
| Q |
20 |
cagaattttgctgctagttcaaatgcttctgctccaccaggaacatcggagagttcaa |
77 |
Q |
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||||| ||||||||||||||||||||||||| ||||||||| |||||| |||||||| |
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| T |
39777559 |
cagaactttgctgctagttcaaatgcttctgatccaccagggacatcgatgagttcaa |
39777502 |
T |
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