View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14682_high_5 (Length: 506)
Name: NF14682_high_5
Description: NF14682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14682_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 18 - 272
Target Start/End: Original strand, 820396 - 820649
Alignment:
| Q |
18 |
aaatatatcttctacacaattcattttttattatcttcttactcgtgcccannnnnnncacacaataattcctttttgttgcagacacagggttatatga |
117 |
Q |
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| T |
820396 |
aaatatatcttccacacaattcattttttattatcttcttactcatgcccatttttttcacacaataattcctttttgttgcagacacagggttatatga |
820495 |
T |
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| Q |
118 |
tttgtacgaagatgtgaaaaattgcgactatgaggacgtgcacgtgctctggtcaatactacatgaatcacattcaccatcagtgcaattgaagaacaaa |
217 |
Q |
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| T |
820496 |
tttgtacgaagatgtgaaaaattgcgactatgaagacgtgcacgtcctctggtcaatactacatgaatcacattcaccatcagtgcaattgaagaacaaa |
820595 |
T |
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| Q |
218 |
aaataattgagaaggagcttgaaataaaatttagaaatcacatattatcccattg |
272 |
Q |
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| T |
820596 |
aaataattgagaa-gagcttgaaataaaatttagaaatcacatattatcccattg |
820649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 391 - 465
Target Start/End: Original strand, 820773 - 820847
Alignment:
| Q |
391 |
actagttagttatacatacattattatgagtgttcaaatcaaaactgatataaaataaactaaaaaccaactcaa |
465 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
820773 |
actagttagttatacatacattattatgagtgttcaaatcaaaactgatataaaataaactaaaaatcaactcaa |
820847 |
T |
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