View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14682_high_6 (Length: 434)
Name: NF14682_high_6
Description: NF14682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14682_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 8 - 418
Target Start/End: Complemental strand, 1495376 - 1494955
Alignment:
| Q |
8 |
taggttcatagttgcggtttgtaagtttaagttgtcaaactcgttataatctcttttcagacctataaactctgatactataagtaggtcaagtgacggt |
107 |
Q |
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| T |
1495376 |
taggttcatagttgcggtttgtaagtttaagttgtcaaactcgttataatctcttttcagacctataaactctgatactataagtaggtcaagtgatggt |
1495277 |
T |
|
| Q |
108 |
ttgtaaagtgataagtattagtatttgtaaacttctttcaaacctttaagctctgataatatt-------tatactagacataactcatatttacacaat |
200 |
Q |
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| T |
1495276 |
ttgtaaagtgataagtattagtatttgtaaacttctttcaaacctttaagctctgataatattaagtttttatactagacataactcatatttacacaat |
1495177 |
T |
|
| Q |
201 |
cggcttgtaacgtgagtaatgtcaatat----gtattttcaaactttatcttttttcaacctgggacttgagtttttccaatgatcccaatatttaatat |
296 |
Q |
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| T |
1495176 |
cggcttgtaacgtgagtaatgtcactctctacgtattttcaaagtttatctcttttcaacgtgggacttgagtttttccaatgatcgcaatatttaatat |
1495077 |
T |
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| Q |
297 |
cgtaaatattatggccaaatacagctaatatgtagctagctacaattgcattcgcagaaacatgaaaaaccttgatttaaaggagaaatggtttgatatt |
396 |
Q |
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| T |
1495076 |
cgtaaatattattgccaaatacagctaatatgtagctagctacaattgcattcgcagaaacatgaaaaaccttgatttaaaggagaaatggtttgatatt |
1494977 |
T |
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| Q |
397 |
ttgattaccgcaatcataaggc |
418 |
Q |
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| T |
1494976 |
ttgattaccgcaatcacaaggc |
1494955 |
T |
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