View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14682_low_10 (Length: 417)
Name: NF14682_low_10
Description: NF14682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14682_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 1 - 399
Target Start/End: Complemental strand, 44950659 - 44950267
Alignment:
| Q |
1 |
agacaaagaacacgtgctgaagtgattagagatagatgatcgaagcgaatgaacatgactctgccacgcgccttcgtgtgacaggtatcctcccgccaca |
100 |
Q |
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| T |
44950659 |
agacaaagaacacgtgctgaagtgattagagatagatgatcgaagcgaatgaacatgactctgccacgcgccttcgtgtgacaggtatcctcccgccaca |
44950560 |
T |
|
| Q |
101 |
ctcctttctcataaaataaccaatcctcttttctctctcctctgccctaattctaatttcaaattaaattaaaatctctttcattttcatttctcgattc |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44950559 |
ctcctttctcataaaataaccaatcctcttttctctctcctctgccctaattctaatttcaaattaaattaaaatctctttcattttcatttctcgattc |
44950460 |
T |
|
| Q |
201 |
caaatcaaacttcttcatccttcaaccttgattcatacttcaatcaacatattctaattccattccttctgattattcttccacgaaccaggttggtgag |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44950459 |
caaatcaaacttcttcatccttcaaccttgattcatacttcaatcaacatattctaattccattccttctgattattcttccacgaaccaggttggtgag |
44950360 |
T |
|
| Q |
301 |
ccaaa-aaaatcacnnnnnnnnnnnnnnnnnnnnatgattagatcgttttctgtttcatccattgaatttcatgttatggaaattaaagttaggtacttt |
399 |
Q |
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||||| |||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44950359 |
ccaaaaaaaatcac-------tttttttttttttatgattagatcgttttctgtttgatccattgaatttcatgttatggaaattaaagttaggtacttt |
44950267 |
T |
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