View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14682_low_11 (Length: 406)

Name: NF14682_low_11
Description: NF14682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14682_low_11
NF14682_low_11
[»] chr3 (1 HSPs)
chr3 (19-391)||(23569670-23570042)
[»] chr5 (1 HSPs)
chr5 (72-388)||(41866515-41866831)
[»] chr2 (1 HSPs)
chr2 (141-367)||(9722633-9722859)
[»] chr8 (1 HSPs)
chr8 (225-380)||(38281562-38281717)
[»] chr7 (2 HSPs)
chr7 (173-238)||(22139954-22140019)
chr7 (173-238)||(40539344-40539409)
[»] chr4 (1 HSPs)
chr4 (188-366)||(56067896-56068074)


Alignment Details
Target: chr3 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 19 - 391
Target Start/End: Complemental strand, 23570042 - 23569670
Alignment:
Q  19 aaccaccactctcataagaactattagtaacactaccagaaccttggggcgcgtctttatcacgcgcccccacggtcttctcaccttccatctccctaaa 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23570042 aaccaccactctcataagaactattagtaacactaccagaaccttggggcgcgtctttatcacgcgcccccacggtcttctcaccttccatctccctaaa 23569943  T
Q  119 ccgttgaagataacctttcaacggctcaacatactcctcgaatcccaacgtcgtcatcgcccaaagcaaatcatcgccgttgatcgtcttccgcttctca 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23569942 ccgttgaagataacctttcaacggctcaacatactcctcgaatcccaacgtcgtcatcgcccaaagcaaatcatcgccgttgatcgtcttccgcttctca 23569843  T
Q  219 cgttggcacttatcggaggcttcgccggtgatgaagctgatgaactctgaaacacactcttgaactgtttcctttgcgtcttttgagatcttcgcgttcg 318  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23569842 cgttgacacttatcggaggcttcgccggtgatgaagctgatgaactctgaaacacactcttgaactgtttcctttgcgtcttttgagatcttcgcgttcg 23569743  T
Q  319 ctggtagtgcttttttcatgatcctgcttacgtttgctattggaagaaatcggtcttgttctcgtggtgacat 391  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23569742 ctggtagtgcttttttcatgatcctgcttacgtttgctattggaagaaatcggtcttgttctcgtggtgacat 23569670  T

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Target: chr5 (Bit Score: 125; Significance: 3e-64; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 72 - 388
Target Start/End: Complemental strand, 41866831 - 41866515
Alignment:
Q  72 tctttatcacgcgcccccacggtcttctcaccttccatctccctaaaccgttgaagataacctttcaacggctcaacatactcctcgaatcccaacgtcg 171  Q
    ||||||||||| ||  | ||||| ||||||||||| ||||| || || ||||||||||||   |||||||| ||||| ||||| || ||||| ||||| |    
T  41866831 tctttatcacgtgcagcaacggttttctcaccttcgatctctctgaatcgttgaagataaatcttcaacggttcaacgtactcttcaaatcctaacgtag 41866732  T
Q  172 tcatcgcccaaagcaaatcatcgccgttgatcgtcttccgcttctcacgttggcacttatcggaggcttcgccggtgatgaagctgatgaactctgaaac 271  Q
    ||||||||||||| | ||| ||||||||||||||||| || ||||| |  || ||||||||||| ||||| ||||||||||||||||||||||| || ||    
T  41866731 tcatcgcccaaagtagatcgtcgccgttgatcgtctttcgtttctctctctgacacttatcggaagcttcaccggtgatgaagctgatgaactccgatac 41866632  T
Q  272 acactcttgaactgtttcctttgcgtcttttgagatcttcgcgttcgctggtagtgcttttttcatgatcctgcttacgtttgctattggaagaaatcgg 371  Q
    ||| || || || |||||||| || ||||| |||||||||||||| |||||||  || || ||||| || ||||| |||||||||||||| | |||||||    
T  41866631 acattcctgcaccgtttccttagcatctttcgagatcttcgcgtttgctggtaacgccttcttcattattctgctcacgtttgctattggtaaaaatcgg 41866532  T
Q  372 tcttgttctcgtggtga 388  Q
    |||||||||||||||||    
T  41866531 tcttgttctcgtggtga 41866515  T

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Target: chr2 (Bit Score: 79; Significance: 8e-37; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 141 - 367
Target Start/End: Complemental strand, 9722859 - 9722633
Alignment:
Q  141 ggctcaacatactcctcgaatcccaacgtcgtcatcgcccaaagcaaatcatcgccgttgatcgtcttccgcttctcacgttggcacttatcggaggctt 240  Q
    ||||||||||| || || ||||| |  || ||||| |||||||| | |||||| |||||||| || |||| ||||||    || |||||||| || ||||    
T  9722859 ggctcaacataatcttcaaatccaagagttgtcatagcccaaagaagatcatcaccgttgattgttttcctcttctctttctgacacttatcagaagctt 9722760  T
Q  241 cgccggtgatgaagctgatgaactctgaaacacactcttgaactgtttcctttgcgtcttttgagatcttcgcgttcgctggtagtgcttttttcatgat 340  Q
    | || || ||||| ||||| |||||||| ||||||||||| |||||||| ||||| |||||||||||||| ||||| |||||||  || |||||||||||    
T  9722759 ctccagttatgaaactgataaactctgatacacactcttgtactgtttcttttgcttcttttgagatctttgcgtttgctggtaaagcctttttcatgat 9722660  T
Q  341 cctgcttacgtttgctattggaagaaa 367  Q
    ||| || ||||||||||||||||||||    
T  9722659 cctactcacgtttgctattggaagaaa 9722633  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 225 - 380
Target Start/End: Complemental strand, 38281717 - 38281562
Alignment:
Q  225 cacttatcggaggcttcgccggtgatgaagctgatgaactctgaaacacactcttgaactgtttcctttgcgtcttttgagatcttcgcgttcgctggta 324  Q
    |||||||| || ||||| || || ||||| || |||||||| || ||||| |||||||| ||||| ||||| ||||||||||| || || || ||||| |    
T  38281717 cacttatcagaagcttcaccagtaatgaaactaatgaactcagagacacattcttgaaccgtttcttttgcttcttttgagattttagcatttgctggaa 38281618  T
Q  325 gtgcttttttcatgatcctgcttacgtttgctattggaagaaatcggtcttgttct 380  Q
    ||||| ||||||| || | ||| ||||| || ||||| || || | ||||||||||    
T  38281617 gtgctcttttcattatacggctcacgttagcaattggtaggaacctgtcttgttct 38281562  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 173 - 238
Target Start/End: Complemental strand, 22140019 - 22139954
Alignment:
Q  173 catcgcccaaagcaaatcatcgccgttgatcgtcttccgcttctcacgttggcacttatcggaggc 238  Q
    ||||||||||||||||||||| ||||| |||||||||| |||||| |  || |||||||| |||||    
T  22140019 catcgcccaaagcaaatcatcaccgttaatcgtcttcctcttctctctctgacacttatcagaggc 22139954  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 173 - 238
Target Start/End: Complemental strand, 40539409 - 40539344
Alignment:
Q  173 catcgcccaaagcaaatcatcgccgttgatcgtcttccgcttctcacgttggcacttatcggaggc 238  Q
    ||||||||||||||||||||| ||||| |||||||||| |||||| |  || |||||||| |||||    
T  40539409 catcgcccaaagcaaatcatcaccgttaatcgtcttcctcttctctctctgacacttatcagaggc 40539344  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 188 - 366
Target Start/End: Complemental strand, 56068074 - 56067896
Alignment:
Q  188 atcatcgccgttgatcgtcttccgcttctcacgttggcacttatcggaggcttcgccggtgatgaagctgatgaactctgaaacacactcttgaactgtt 287  Q
    |||||| ||||| || ||||||| ||||||    || ||||| || || ||||| || || |||||||| ||||||||||| ||||||||||| |  |||    
T  56068074 atcatcaccgtttattgtcttcctcttctctttctgacacttttcagatgcttcacctgttatgaagcttatgaactctgatacacactcttgcatcgtt 56067975  T
Q  288 tcctttgcgtcttttgagatcttcgcgttcgctggtagtgcttttttcatgatcctgcttacgtttgctattggaagaa 366  Q
    || || || ||||| || ||||| ||  |||  ||||  ||||| ||||||||||| |  ||||||||||| |||||||    
T  56067974 tctttagcttctttcgatatctttgctctcgtcggtaacgctttcttcatgatcctacccacgtttgctatgggaagaa 56067896  T

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