View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14682_low_12 (Length: 403)
Name: NF14682_low_12
Description: NF14682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14682_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 11 - 385
Target Start/End: Complemental strand, 13919160 - 13918786
Alignment:
| Q |
11 |
catcatcaatctagcaactcagaaatccttcaacaacttgcgaacttgctccaaagtaacaaacagaacaacagtgaaaggtccctgccttgaaattgta |
110 |
Q |
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| T |
13919160 |
catcatcaatctagcaactcagaaatccttcaacaacttgcgaacttgctccaaagtaacaaacagaacaacagtgaaaggtccctgccttgaaattgta |
13919061 |
T |
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| Q |
111 |
ggaataaatcccttgtatagagccagaggaccctcagcacgaactgttttcaaagcacaatccaaagcaccagcataaggtggttcctttccagcctcca |
210 |
Q |
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| T |
13919060 |
ggaataaatcccttgtaaagagccataggaccctcagcacgaactgtcttcaaagcacaatccaaagcaccagcatagggtggttcctttccagcctcca |
13918961 |
T |
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| Q |
211 |
ctttcatgttcatcacccttgttttaataacatccaccggattcgacgcaaccgccgccacaaatcccgctgcaaaactagctgtcacgtgggtcccaag |
310 |
Q |
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| T |
13918960 |
ccttcatgttcatcacccttgtcttaataacatccactggattcgacgcaaccgccgccacaaatcccgctgcaaaactagctgtcacatgggtcccaag |
13918861 |
T |
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| Q |
311 |
gccatcacgcataacacccttctcaagaatcatctccttgaattgatcatatgatgccagctgtgaagctgtgac |
385 |
Q |
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| T |
13918860 |
gccatcacgcataacacccttctcaagaatcatctccttgaattgatcatatgaagccagctgtgaagctgtgac |
13918786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 98; Significance: 4e-48; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 31 - 316
Target Start/End: Complemental strand, 28830382 - 28830097
Alignment:
| Q |
31 |
agaaatccttcaacaacttgcgaacttgctccaaagtaacaaacagaacaacagtgaaaggtccctgccttgaaattgtaggaataaatcccttgtatag |
130 |
Q |
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| T |
28830382 |
agaaatccttaagcaacttacgaacctgttccaatgtaacaaacaacacaacggtaaacggtccctgccttgtaattgtaggaataaaacccttataaag |
28830283 |
T |
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| Q |
131 |
agccagaggaccctcagcacgaactgttttcaaagcacaatccaaagcaccagcataaggtggttcctttccagcctccactttcatgttcatcaccctt |
230 |
Q |
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||||| ||||||||||||||||| || |||||||||||||| | ||||| | |||||||| | |||||||||||| ||||| ||||||||||| |
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| T |
28830282 |
agccataggaccctcagcacgaatagtcttcaaagcacaatcaatggcaccggagtaaggtggaggcgatccagcctccaccttcatattcatcacccta |
28830183 |
T |
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| Q |
231 |
gttttaataacatccaccggattcgacgcaaccgccgccacaaatcccgctgcaaaactagctgtcacgtgggtcccaaggccatc |
316 |
Q |
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| T |
28830182 |
gtcttaatcacatccactggattcgatgcaaccgcggccacaaaacctgccgaaaaactcgctaccacatgggtcccaagcccatc |
28830097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 69 - 135
Target Start/End: Complemental strand, 46255193 - 46255127
Alignment:
| Q |
69 |
acaaacagaacaacagtgaaaggtccctgccttgaaattgtaggaataaatcccttgtatagagcca |
135 |
Q |
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| T |
46255193 |
acaaaaagaacaacagtaaaaggaccctgtcttgaaattgtaggaataaaacccttataaagagcca |
46255127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 249 - 309
Target Start/End: Complemental strand, 46255010 - 46254950
Alignment:
| Q |
249 |
ggattcgacgcaaccgccgccacaaatcccgctgcaaaactagctgtcacgtgggtcccaa |
309 |
Q |
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| T |
46255010 |
ggattcgacgcaaccgccgccaaaaaacccgccgcaaaactcgctaccacgtgggtcccaa |
46254950 |
T |
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