View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14682_low_13 (Length: 384)
Name: NF14682_low_13
Description: NF14682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14682_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 349; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 1 - 365
Target Start/End: Original strand, 31628956 - 31629320
Alignment:
| Q |
1 |
aactctccgtatcccgaaaatcaaccatatcaactccatttctcataatgctctcaggtttgatttcagttcaactcaactttctttgtgttattctatt |
100 |
Q |
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| T |
31628956 |
aactctccgtatcccgaaactcaaccatatcaactccatttctcataatgctctcaggtttgatttcagttcaactcaactttctttgtgttattctatt |
31629055 |
T |
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| Q |
101 |
ctctctttatgattgattgcatctctttctcatctatattctatgcagaagtgaagacaatgacaataagcgttgggttcaaatcgtatcgtgggagcct |
200 |
Q |
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| T |
31629056 |
ctctctttatgattgattgcatctctttctcatctatattctatgcagaagtgaagacaatgacaataagcgttgggttcaaatcgtatcgtgggagcct |
31629155 |
T |
|
| Q |
201 |
agagcatttttatatcataattttctggtcagttttgcttcctttcttactttttatgataagaattatttgttaatgatctaattatcaaatcacgtaa |
300 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
31629156 |
agagcatttttatatcataattttctggtcagttttgtttcctttcttactttttatgataagaattatttgttaatgatctaattatcaaattacgtaa |
31629255 |
T |
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| Q |
301 |
ttggaatcaaaatgacatgtgttacggacatttcttgttgaaagagtgtccggtgtcctgcatgt |
365 |
Q |
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| T |
31629256 |
ttggaatcaaaatgacatgtgttacggacatttcttgttgaaagagtgtccggtgtccttcatgt |
31629320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 137 - 234
Target Start/End: Original strand, 31643561 - 31643658
Alignment:
| Q |
137 |
tattctatgcagaagtgaagacaatgacaataagcgttgggttcaaatcgtatcgtgggagcctagagcatttttatatcataattttctggtcagtt |
234 |
Q |
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| T |
31643561 |
tattctatgcagaagtgaagacgatgacaataagcgttgggttgaaatcgtatcgtgggagcctagagcgtttttatatcataattttctggttagtt |
31643658 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 143 - 231
Target Start/End: Original strand, 31650740 - 31650828
Alignment:
| Q |
143 |
atgcagaagtgaagacaatgacaataagcgttgggttcaaatcgtatcgtgggagcctagagcatttttatatcataattttctggtca |
231 |
Q |
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| T |
31650740 |
atgcagaaatgaagacgatgacaataagcgttgggttcaaatcatatcgtgggagcctagagcatttttatatcataattttctggtca |
31650828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 160 - 287
Target Start/End: Original strand, 31654226 - 31654359
Alignment:
| Q |
160 |
atgacaataagcgttgggttcaaatcgtatcgtgggagcctagagcatttttatatcataattttctggtcagtt--ttgcttcctttcttact---ttt |
254 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| ||| |||| ||||| || ||| |
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| T |
31654226 |
atgacaataagcgttgggttcaaatcatatcgtgggagcctagagcatttttatatcataattttcttgtcagtttcttgtttcccttcttgcttgcttt |
31654325 |
T |
|
| Q |
255 |
ta-tgataagaattatttgttaatgatctaatta |
287 |
Q |
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|| ||||||| ||||||||||||||||||||||| |
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| T |
31654326 |
tattgataaggattatttgttaatgatctaatta |
31654359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 143 - 234
Target Start/End: Original strand, 31635593 - 31635684
Alignment:
| Q |
143 |
atgcagaagtgaagacaatgacaataagcgttgggttcaaatcgtatcgtgggagcctagagcatttttatatcataattttctggtcagtt |
234 |
Q |
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||||||| | || ||| |||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| ||||||||| |
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| T |
31635593 |
atgcagacgcgatgacgatgacaataagcgttgggttgaaatcgtatcgtgggagcctagagtatttttatatcataattttttggtcagtt |
31635684 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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