View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14682_low_15 (Length: 356)
Name: NF14682_low_15
Description: NF14682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14682_low_15 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 332; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 17 - 356
Target Start/End: Original strand, 35690489 - 35690828
Alignment:
| Q |
17 |
attttattgtttgtaattgacctttaatctttaacacaattggtctttgaattcaacatttacaattaactgattaatcatttgattttataggagtgag |
116 |
Q |
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| T |
35690489 |
attttattgtttgtacttgacctttaatctttaacacaattggtctttgaattcaacatttacaattaactgattaatcatttgattttataggagtgag |
35690588 |
T |
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| Q |
117 |
gactggaacaacccagatggtataaaatgtgctaaagaaacaactccagttctcaacatgtcgacccctttgaatgtgggcacagatcgtcgccttttcg |
216 |
Q |
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| T |
35690589 |
gactggaacaacccagatggtataaaatgtgctaaagaaacaactccagttctcaacatgtcgacccctttgaatgtgggcacagatcgtcgccttttcg |
35690688 |
T |
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| Q |
217 |
tcattgccaacaatgtaacaaaatcaatgaaggtgccagtgtatttccttaacatcacaaccttatcagagtatcgaaaagatgcacatacctctgttta |
316 |
Q |
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| T |
35690689 |
tcattgccaacaatgtaacaaaatcaatgaaggtgccagtgtatttccttaacatcacaaccttatcagagtatcgaaaagatgcgcatacctctgttta |
35690788 |
T |
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| Q |
317 |
taccatacgtcaagggaagatgctaacacctgaacaacaa |
356 |
Q |
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| T |
35690789 |
taccatacgtcaagggaagatgctaacacctgaacaacaa |
35690828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 16 - 59
Target Start/End: Original strand, 35690433 - 35690476
Alignment:
| Q |
16 |
cattttattgtttgtaattgacctttaatctttaacacaattgg |
59 |
Q |
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| T |
35690433 |
cattttattgtttgtacttgacctttaaactttaacacatttgg |
35690476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 107 - 331
Target Start/End: Original strand, 31823082 - 31823306
Alignment:
| Q |
107 |
taggagtgaggactggaacaacccagatggtataaaatgtgctaaagaaacaactccagttctcaacatgtcgacccctttgaatgtgggcacagatcgt |
206 |
Q |
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|||||| ||||| |||||||| ||| |||| ||||||||||| || ||||| || ||| ||||||||||||| || || | | || |||||||||| | |
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| T |
31823082 |
taggagcgaggattggaacaatccaaatggaataaaatgtgcaaaggaaactacaccaattctcaacatgtctactccagtacaagtaggcacagatcat |
31823181 |
T |
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| Q |
207 |
cgccttttcgtcattgccaacaatgtaacaaaatcaatgaaggtgccagtgtatttccttaacatcacaaccttatcagagtatcgaaaagatgcacata |
306 |
Q |
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|| ||||| |||||||| || ||||| |||||||||| || ||| |||| |||| | ||||||| | |||||||| ||| ||||||||||||||| |
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| T |
31823182 |
cgtctttttgtcattgctaaaaatgtgacaaaatcaacaaaagtgaaagtggattttatatacatcaccaaattatcagaatatagaaaagatgcacata |
31823281 |
T |
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| Q |
307 |
cctctgtttataccatacgtcaagg |
331 |
Q |
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| T |
31823282 |
cttctgtttacacaatacgtcaagg |
31823306 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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