View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14682_low_17 (Length: 325)
Name: NF14682_low_17
Description: NF14682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14682_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 148; Significance: 4e-78; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 15 - 174
Target Start/End: Complemental strand, 36545350 - 36545191
Alignment:
| Q |
15 |
tttacaacaatacacagggattaagaatttgaaaaccaaaaagaaaggccagcactagattacctgagttgtacatgatatgataacctatcaatgtcaa |
114 |
Q |
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| T |
36545350 |
tttacaacaatacacagggattaagaatttgaaaaccgaaaagaaaggccagcactagattacctgagttgtacatgatatgataacctatcaatgtcaa |
36545251 |
T |
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| Q |
115 |
atctttttactactataaataggcctttgttctagtagaaatagttactttctttaccaa |
174 |
Q |
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| T |
36545250 |
atctttttagaactataaataggcctttgttctagtagaaatagttactttctttaccaa |
36545191 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 171 - 311
Target Start/End: Complemental strand, 36544983 - 36544843
Alignment:
| Q |
171 |
ccaataaatgatattctttcactacaaaatttcttgcataagttgaagttagcttctacaccttaatttcttcaaaacctctaacatctacacatatttc |
270 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36544983 |
ccaataaatgatattttttcactacaaaatttcttgcataagttgaagttagcttctacaccttaatttcttcaaaacctctaacatctacacatatttc |
36544884 |
T |
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| Q |
271 |
aataagatgtactacatataagctgcatttccttcctttat |
311 |
Q |
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| T |
36544883 |
aataaaatgtactacatataagctgcatttccttcctttat |
36544843 |
T |
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